HL_6QIK_069

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_069 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.38

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6QIK|1|A|G|3220
6QIK|1|A|C|3221
6QIK|1|A|U|3222
6QIK|1|A|A|3223
6QIK|1|A|C|3265

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L6-A

Chain f

60S ribosomal protein L33-A