HL_6QIK_075
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 6QIK|1|y|A|111, 6QIK|1|y|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QIK_075 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1189
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6QIK|1|y|C|108
6QIK|1|y|A|109
6QIK|1|y|C|110
6QIK|1|y|A|111
6QIK|1|y|U|112
6QIK|1|y|U|113
6QIK|1|y|G|114
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- 60S ribosomal protein L25
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
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