HL_6QNQ_065

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6QNQ|1|14|G|1325, 6QNQ|1|14|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_065 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1228

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6QNQ|1|14|G|1324
6QNQ|1|14|G|1325
6QNQ|1|14|U|1326
6QNQ|1|14|C|1327
6QNQ|1|14|G|1328
6QNQ|1|14|U|1329
6QNQ|1|14|C|1330

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain A5

50S ribosomal protein L22