HL_6QNQ_139

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

6QNQ|1|1H|U|162, 6QNQ|1|1H|U|163, 6QNQ|1|1H|U|164, 6QNQ|1|1H|U|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_139 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2911

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6QNQ|1|1H|C|155
6QNQ|1|1H|U|161
6QNQ|1|1H|U|162
6QNQ|1|1H|U|163
6QNQ|1|1H|U|164
6QNQ|1|1H|U|165
6QNQ|1|1H|G|171

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28