HL_6QNQ_144

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6QNQ|1|1H|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_144 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1476

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6QNQ|1|1H|U|305
6QNQ|1|1H|U|306
6QNQ|1|1H|G|307
6QNQ|1|1H|G|308
6QNQ|1|1H|G|309
6QNQ|1|1H|A|310
6QNQ|1|1H|A|311
6QNQ|1|1H|G|312

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain G8

50S ribosomal protein L24