HL_6QNQ_160

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

6QNQ|1|1H|C|885, 6QNQ|1|1H|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_160 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3575

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6QNQ|1|1H|G|883
6QNQ|1|1H|C|884
6QNQ|1|1H|C|885
6QNQ|1|1H|C|886
6QNQ|1|1H|A|887
6QNQ|1|1H|C|888
6QNQ|1|1H|C|889
6QNQ|1|1H|A|890
6QNQ|1|1H|G|892
6QNQ|1|1H|C|893

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 4I

30S ribosomal protein S13

Chain AI

30S ribosomal protein S19