HL_6QNQ_189

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6QNQ|1|1H|A|2268, 6QNQ|1|1H|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_189 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0817

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6QNQ|1|1H|C|2264
6QNQ|1|1H|U|2265
6QNQ|1|1H|A|2266
6QNQ|1|1H|A|2267
6QNQ|1|1H|A|2268
6QNQ|1|1H|A|2269
6QNQ|1|1H|G|2270
6QNQ|1|1H|G|2271
6QNQ|1|1H|U|2272
6QNQ|1|1H|A|2273
6QNQ|1|1H|A|2274
6QNQ|1|1H|C|2275
6QNQ|1|1H|G|2276

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27