HL_6QNQ_207

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6QNQ|1|1K|C|16, 6QNQ|1|1K|G|19, 6QNQ|1|1K|G|20, 6QNQ|1|1K|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_207 not in the Motif Atlas

Homologous match to HL_6UFM_001

Geometric discrepancy: 0.2217

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6QNQ|1|1K|C|13
6QNQ|1|1K|A|14
6QNQ|1|1K|G|15
6QNQ|1|1K|C|16
6QNQ|1|1K|C|17
6QNQ|1|1K|U|18
6QNQ|1|1K|G|19
6QNQ|1|1K|G|20
6QNQ|1|1K|U|21
6QNQ|1|1K|A|22
6QNQ|1|1K|G|23

Current chains

Chain 1K

E. coli tRNAfMet

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2K

Transfer RNA; tRNA