HL_6QNQ_229

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(OMC)

Length

11 nucleotides

Bulged bases

6QNQ|1|14|A|1913

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_229 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.2258

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6QNQ|1|14|G|1910
6QNQ|1|14|PSU|1911
6QNQ|1|14|A|1912
6QNQ|1|14|A|1913
6QNQ|1|14|C|1914
6QNQ|1|14|5MU|1915
6QNQ|1|14|A|1916
6QNQ|1|14|PSU|1917
6QNQ|1|14|A|1918
6QNQ|1|14|A|1919
6QNQ|1|14|OMC|1920

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA