HL_6QNQ_242
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- G(PSU)AAC(5MU)A(PSU)AA(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 6QNQ|1|1H|A|1913
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QNQ_242 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.4373
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6QNQ|1|1H|G|1910
6QNQ|1|1H|PSU|1911
6QNQ|1|1H|A|1912
6QNQ|1|1H|A|1913
6QNQ|1|1H|C|1914
6QNQ|1|1H|5MU|1915
6QNQ|1|1H|A|1916
6QNQ|1|1H|PSU|1917
6QNQ|1|1H|A|1918
6QNQ|1|1H|A|1919
6QNQ|1|1H|OMC|1920
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1K
- Transfer RNA; tRNA
- Chain 2K
- Transfer RNA; tRNA
- Chain 4K
- mRNA
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