HL_6QNR_209
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QNR_209 not in the Motif Atlas
- Homologous match to HL_1H4S_003
- Geometric discrepancy: 0.2813
- The information below is about HL_1H4S_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6QNR|1|1K|G|53
6QNR|1|1K|5MU|54
6QNR|1|1K|PSU|55
6QNR|1|1K|C|56
6QNR|1|1K|G|57
6QNR|1|1K|A|58
6QNR|1|1K|U|59
6QNR|1|1K|U|60
6QNR|1|1K|C|61
Current chains
- Chain 1K
- E. coli tRNAPhe
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 88
- 50S ribosomal protein L16
- Chain H8
- 50S ribosomal protein L25
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