6QNR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6QNR_001 | 1/13/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_6QNR_228 | 1/13/79:89 | No text annotation | ||
| HL_6QNR_002 | 1/13/81:88 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6QNR_229 | 1/13/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.3 | |
| HL_6QNR_230 | 1/13/186:191 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_6QNR_261 | 1/13/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_6QNR_232 | 1/13/259:267 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_6QNR_007 | 1/13/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.3 | |
| HL_6QNR_008 | 1/13/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_6QNR_009 | 1/13/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_6QNR_010 | 1/13/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_6QNR_011 | 1/13/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_6QNR_012 | 1/13/458:474 | GNRA | homologous HL_4LFB_012 HL_34789.3 | |
| HL_6QNR_233 | 1/13/522:527 | GNRA variation | homologous HL_5J7L_205 NA | |
| HL_6QNR_014 | 1/13/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_6QNR_015 | 1/13/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_6QNR_016 | 1/13/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.3 | |
| HL_6QNR_017 | 1/13/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_6QNR_018 | 1/13/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6QNR_019 | 1/13/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.3 | |
| HL_6QNR_020 | 1/13/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.3 | |
| HL_6QNR_021 | 1/13/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6QNR_022 | 1/13/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.3 | |
| HL_6QNR_234 | 1/13/1028:1032 | No text annotation | ||
| HL_6QNR_024 | 1/13/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_6QNR_025 | 1/13/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_6QNR_026 | 1/13/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6QNR_027 | 1/13/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.3 | |
| HL_6QNR_028 | 1/13/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.3 | |
| HL_6QNR_029 | 1/13/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6QNR_030 | 1/13/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6QNR_031 | 1/13/1449:1454 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_6QNR_032 | 1/13/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.3 | |
| HL_6QNR_033 | 1/14/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6QNR_034 | 1/14/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6QNR_035 | 1/14/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_6QNR_036 | 1/14/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6QNR_038 | 1/14/194:201 | No text annotation | geometric HL_4V9F_006 HL_48677.1 | |
| HL_6QNR_039 | 1/14/225:230 | No text annotation | homologous HL_7A0S_007 HL_51020.2 | |
| HL_6QNR_040 | 1/14/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6QNR_041 | 1/14/270J:270P | No text annotation | ||
| HL_6QNR_042 | 1/14/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6QNR_043 | 1/14/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6QNR_044 | 1/14/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6QNR_236 | 1/14/383:391 | No text annotation | ||
| HL_6QNR_046 | 1/14/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6QNR_047 | 1/14/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6QNR_048 | 1/14/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6QNR_049 | 1/14/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_6QNR_050 | 1/14/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6QNR_051 | 1/14/611:617 | No text annotation | homologous HL_7A0S_019 HL_59381.2 | |
| HL_6QNR_052 | 1/14/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6QNR_053 | 1/14/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6QNR_054 | 1/14/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6QNR_055 | 1/14/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6QNR_056 | 1/14/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_6QNR_057 | 1/14/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_6QNR_262 | 1/14/875:902 | No text annotation | ||
| HL_6QNR_058 | 1/14/882:894 | No text annotation | ||
| HL_6QNR_059 | 1/14/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.3 | |
| HL_6QNR_060 | 1/14/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6QNR_263 | 1/14/1171:1178 | No text annotation | ||
| HL_6QNR_062 | 1/14/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6QNR_063 | 1/14/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6QNR_064 | 1/14/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6QNR_065 | 1/14/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6QNR_066 | 1/14/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6QNR_067 | 1/14/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6QNR_264 | 1/14/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_036 HL_49081.1 | |
| HL_6QNR_238 | 1/14/1533:1538 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6QNR_070 | 1/14/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_6QNR_071 | 1/14/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6QNR_072 | 1/14/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6QNR_073 | 1/14/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6QNR_074 | 1/14/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6QNR_075 | 1/14/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6QNR_076 | 1/14/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_6QNR_077 | 1/14/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6QNR_078 | 1/14/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6QNR_239 | 1/14/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_6QNR_080 | 1/14/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6QNR_081 | 1/14/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6QNR_082 | 1/14/2142:2149 | No text annotation | ||
| HL_6QNR_083 | 1/14/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6QNR_084 | 1/14/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6QNR_085 | 1/14/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6QNR_265 | 1/14/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_6QNR_087 | 1/14/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6QNR_088 | 1/14/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6QNR_089 | 1/14/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6QNR_090 | 1/14/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6QNR_091 | 1/14/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6QNR_266 | 1/14/2528:2535 | GNRA variation | homologous HL_9DFE_059 HL_46665.2 | |
| HL_6QNR_093 | 1/14/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_6QNR_094 | 1/14/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6QNR_095 | 1/14/2658:2663 | GNRA | geometric HL_4QLM_001 HL_34789.3 | |
| HL_6QNR_096 | 1/14/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6QNR_097 | 1/14/2745:2759 | No text annotation | homologous HL_7A0S_065 HL_53269.2 | |
| HL_6QNR_099 | 1/14/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6QNR_100 | 1/14/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6QNR_240 | 1/16/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_6QNR_101 | 1/16/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_6QNR_102 | 1/16/86:90 | GNRA | homologous HL_4V9F_072 HL_34789.3 | |
| HL_6QNR_103 | 1/1G/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_6QNR_105 | 1/1G/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.3 | |
| HL_6QNR_241 | 1/1G/186:191 | No text annotation | homologous HL_4LFB_004 HL_89167.2 | |
| HL_6QNR_267 | 1/1G/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_90436.3 | |
| HL_6QNR_108 | 1/1G/259:267 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_6QNR_109 | 1/1G/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_6QNR_110 | 1/1G/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_6QNR_111 | 1/1G/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.3 | |
| HL_6QNR_112 | 1/1G/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.3 | |
| HL_6QNR_113 | 1/1G/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_6QNR_114 | 1/1G/457:475 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.2 | |
| HL_6QNR_243 | 1/1G/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.3 | |
| HL_6QNR_116 | 1/1G/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_6QNR_117 | 1/1G/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.2 | |
| HL_6QNR_118 | 1/1G/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.3 | |
| HL_6QNR_119 | 1/1G/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_6QNR_120 | 1/1G/838:848 | No text annotation | geometric HL_8CRE_021 NA | |
| HL_6QNR_121 | 1/1G/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_6QNR_122 | 1/1G/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_6QNR_123 | 1/1G/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6QNR_124 | 1/1G/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.3 | |
| HL_6QNR_125 | 1/1G/1028A:1032B | No text annotation | ||
| HL_6QNR_126 | 1/1G/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.3 | |
| HL_6QNR_127 | 1/1G/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_6QNR_128 | 1/1G/1133:1141 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_6QNR_129 | 1/1G/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.3 | |
| HL_6QNR_130 | 1/1G/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.3 | |
| HL_6QNR_131 | 1/1G/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6QNR_132 | 1/1G/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6QNR_133 | 1/1G/1449:1454 | Mini UNCG | geometric HL_4TUW_002 HL_12626.2 | |
| HL_6QNR_134 | 1/1G/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6QNR_135 | 1/1H/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6QNR_136 | 1/1H/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6QNR_137 | 1/1H/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
| HL_6QNR_138 | 1/1H/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6QNR_245 | 1/1H/155:161 | No text annotation | ||
| HL_6QNR_140 | 1/1H/184:191 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_6QNR_141 | 1/1H/215:220 | No text annotation | homologous HL_7A0S_007 HL_51020.2 | |
| HL_6QNR_142 | 1/1H/236:242 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6QNR_143 | 1/1H/270:276 | No text annotation | geometric HL_4WRT_001 HL_19413.2 | |
| HL_6QNR_144 | 1/1H/330:337 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6QNR_145 | 1/1H/344:348 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6QNR_146 | 1/1H/352:360 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6QNR_246 | 1/1H/411:419 | No text annotation | ||
| HL_6QNR_148 | 1/1H/438:445 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6QNR_149 | 1/1H/489:494 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6QNR_150 | 1/1H/514:519 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6QNR_151 | 1/1H/569:574 | GNRA | geometric HL_3V7E_003 NA | |
| HL_6QNR_152 | 1/1H/590:599 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6QNR_153 | 1/1H/636:642 | No text annotation | homologous HL_7A0S_019 HL_59381.2 | |
| HL_6QNR_154 | 1/1H/655:660 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6QNR_155 | 1/1H/667:673 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6QNR_157 | 1/1H/760:767 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6QNR_158 | 1/1H/792:801 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6QNR_159 | 1/1H/827:833 | UNCG variation | homologous HL_7A0S_023 HL_51020.2 | |
| HL_6QNR_160 | 1/1H/874:879 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_6QNR_268 | 1/1H/932:939 | No text annotation | ||
| HL_6QNR_162 | 1/1H/1001:1008 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6QNR_163 | 1/1H/1025:1032 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6QNR_247 | 1/1H/1218:1224 | No text annotation | ||
| HL_6QNR_166 | 1/1H/1269:1274 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6QNR_167 | 1/1H/1328:1336 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6QNR_168 | 1/1H/1371:1377 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6QNR_169 | 1/1H/1410:1415 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6QNR_170 | 1/1H/1436:1445 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6QNR_171 | 1/1H/1500:1507 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6QNR_172 | 1/1H/1539:1545 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6QNR_173 | 1/1H/1580:1585 | No text annotation | ||
| HL_6QNR_174 | 1/1H/1613:1616 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_6QNR_175 | 1/1H/1659:1666 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_6QNR_176 | 1/1H/1678:1683 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6QNR_177 | 1/1H/1739:1744 | UNCG | homologous HL_5J7L_175 NA | |
| HL_6QNR_178 | 1/1H/1766:1772 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6QNR_179 | 1/1H/1784:1788 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6QNR_180 | 1/1H/1809:1819 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_6QNR_181 | 1/1H/1838:1843 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6QNR_182 | 1/1H/1896:1901 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6QNR_248 | 1/1H/1933:1943 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_6QNR_184 | 1/1H/1972:1980 | No text annotation | homologous HL_7A0S_048 HL_61418.2 | |
| HL_6QNR_185 | 1/1H/2050:2059 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6QNR_186 | 1/1H/2166:2171 | UNCG | homologous HL_3U4M_001 HL_61337.3 | |
| HL_6QNR_187 | 1/1H/2227:2232 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6QNR_188 | 1/1H/2261:2269 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6QNR_189 | 1/1H/2277:2289 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6QNR_269 | 1/1H/2317:2325 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_6QNR_191 | 1/1H/2337:2344 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6QNR_192 | 1/1H/2368:2375 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6QNR_193 | 1/1H/2387:2392 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6QNR_194 | 1/1H/2417:2426 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6QNR_195 | 1/1H/2484:2492 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6QNR_196 | 1/1H/2541:2548 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6QNR_197 | 1/1H/2564:2570 | No text annotation | homologous HL_7RQB_062 NA | |
| HL_6QNR_198 | 1/1H/2607:2612 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6QNR_199 | 1/1H/2671:2676 | GNRA | geometric HL_5J7L_197 NA | |
| HL_6QNR_200 | 1/1H/2714:2719 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6QNR_201 | 1/1H/2759:2773 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6QNR_202 | 1/1H/2807:2815 | No text annotation | homologous HL_7A0S_066 NA | |
| HL_6QNR_203 | 1/1H/2830:2838 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6QNR_204 | 1/1H/2867:2872 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6QNR_250 | 1/1J/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_6QNR_205 | 1/1J/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_6QNR_206 | 1/1J/86:90 | No text annotation | ||
| HL_6QNR_207 | 1/1K/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_6QNR_251 | 1/1K/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_6QNR_209 | 1/1K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H4S_003 HL_33597.3 | |
| HL_6QNR_210 | 1/1L/12:24 | No text annotation | ||
| HL_6QNR_252 | 1/1L/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_6QNR_212 | 1/1L/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.3 | |
| HL_6QNR_213 | 1/2K/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6QNR_253 | 1/2K/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_6QNR_215 | 1/2K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.3 | |
| HL_6QNR_216 | 1/2L/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6QNR_254 | 1/2L/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_6QNR_218 | 1/2L/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.3 | |
| HL_6QNR_219 | 1/3K/12:23 | No text annotation | homologous HL_4WT8_234 NA | |
| HL_6QNR_270 | 1/3K/31:39 | tRNA anticodon loop | homologous HL_5E7K_237 NA | |
| HL_6QNR_221 | 1/3K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4LCK_003 HL_33597.3 | |
| HL_6QNR_222 | 1/3L/13:22 | No text annotation | homologous HL_5E81_219 NA | |
| HL_6QNR_257 | 1/3L/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_6QNR_258 | 1/3L/50:64 | No text annotation | homologous HL_5E81_238 NA | |
| HL_6QNR_225 | 1/5K/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_6QNR_227 | 1/5K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1FIR_003 HL_33597.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6QNR_003 | GNRA with extra near cWW | ||
| HL_6QNR_004 | No text annotation | ||
| HL_6QNR_231 | No text annotation | ||
| HL_6QNR_005 | No text annotation | ||
| HL_6QNR_006 | No text annotation | ||
| HL_6QNR_013 | No text annotation | ||
| HL_6QNR_023 | No text annotation | ||
| HL_6QNR_235 | No text annotation | ||
| HL_6QNR_037 | No text annotation | ||
| HL_6QNR_045 | No text annotation | ||
| HL_6QNR_237 | No text annotation | ||
| HL_6QNR_061 | No text annotation | ||
| HL_6QNR_068 | No text annotation | ||
| HL_6QNR_069 | No text annotation | ||
| HL_6QNR_079 | No text annotation | ||
| HL_6QNR_086 | No text annotation | ||
| HL_6QNR_092 | tRNA anticodon loop | ||
| HL_6QNR_098 | No text annotation | ||
| HL_6QNR_104 | Externally structured | ||
| HL_6QNR_106 | No text annotation | ||
| HL_6QNR_242 | No text annotation | ||
| HL_6QNR_107 | No text annotation | ||
| HL_6QNR_115 | No text annotation | ||
| HL_6QNR_244 | GNRA with extra cWW | ||
| HL_6QNR_139 | No text annotation | ||
| HL_6QNR_147 | No text annotation | ||
| HL_6QNR_156 | No text annotation | ||
| HL_6QNR_161 | No text annotation | ||
| HL_6QNR_164 | No text annotation | ||
| HL_6QNR_165 | No text annotation | ||
| HL_6QNR_183 | No text annotation | ||
| HL_6QNR_190 | No text annotation | ||
| HL_6QNR_249 | No text annotation | ||
| HL_6QNR_208 | No text annotation | ||
| HL_6QNR_211 | No text annotation | ||
| HL_6QNR_214 | No text annotation | ||
| HL_6QNR_217 | No text annotation | ||
| HL_6QNR_255 | No text annotation | ||
| HL_6QNR_220 | No text annotation | ||
| HL_6QNR_256 | No text annotation | ||
| HL_6QNR_223 | No text annotation | ||
| HL_6QNR_224 | No text annotation | ||
| HL_6QNR_259 | No text annotation | ||
| HL_6QNR_226 | No text annotation | ||
| HL_6QNR_260 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6QNR_001 | 1/13/30:32, 1/13/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.2 | |
| IL_6QNR_002 | 1/13/44:45, 1/13/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_6QNR_003 | 1/13/47:52, 1/13/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_6QNR_004 | 1/13/54:56, 1/13/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_6QNR_005 | 1/13/63:66, 1/13/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
| IL_6QNR_006 | 1/13/67:69, 1/13/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.3 | |
| IL_6QNR_387 | 1/13/67:74, 1/13/96:102 | Partly complementary | geometric IL_8D29_010 IL_71154.3 | |
| IL_6QNR_344 | 1/13/78:79, 1/13/89:91 | No text annotation | geometric IL_8VTW_057 NA | |
| IL_6QNR_007 | 1/13/129:131, 1/13/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_6QNR_008 | 1/13/132:136, 1/13/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_6QNR_009 | 1/13/147:153, 1/13/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_6QNR_388 | 1/13/148:154, 1/13/167:174 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_6QNR_346 | 1/13/186:186, 1/13/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.3 | |
| IL_6QNR_011 | 1/13/242:247, 1/13/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_6QNR_012 | 1/13/249:252, 1/13/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_6QNR_013 | 1/13/292:293, 1/13/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6QNR_014 | 1/13/367:369, 1/13/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.3 | |
| IL_6QNR_015 | 1/13/371:375, 1/13/389:390 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_6QNR_016 | 1/13/375:376, 1/13/387:389 | Single bulged G | homologous IL_4LFB_016 IL_28408.2 | |
| IL_6QNR_017 | 1/13/409:416, 1/13/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_6QNR_018 | 1/13/446:450, 1/13/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_6QNR_019 | 1/13/450:455, 1/13/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_6QNR_020 | 1/13/504:511, 1/13/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_6QNR_021 | 1/13/515:521, 1/13/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_6QNR_022 | 1/13/569:575, 1/13/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6QNR_023 | 1/13/580:584, 1/13/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_6QNR_024 | 1/13/594:596, 1/13/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_6QNR_025 | 1/13/597:598, 1/13/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_6QNR_026 | 1/13/605:612, 1/13/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_6QNR_027 | 1/13/654:655, 1/13/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_6QNR_028 | 1/13/657:658, 1/13/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_6QNR_029 | 1/13/662:666, 1/13/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_6QNR_347 | 1/13/673:677, 1/13/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_6QNR_031 | 1/13/683:688, 1/13/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6QNR_032 | 1/13/774:778, 1/13/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6QNR_033 | 1/13/779:783, 1/13/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_6QNR_034 | 1/13/887:894, 1/13/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_6QNR_035 | 1/13/922:923, 1/13/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_6QNR_036 | 1/13/925:927, 1/13/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_6QNR_389 | 1/13/933:935, 1/13/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_6QNR_038 | 1/13/953:954, 1/13/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.3 | |
| IL_6QNR_348 | 1/13/993:997, 1/13/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_6QNR_040 | 1/13/1048:1050, 1/13/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.3 | |
| IL_6QNR_042 | 1/13/1052:1056, 1/13/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_6QNR_043 | 1/13/1057:1058, 1/13/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_6QNR_044 | 1/13/1060:1061, 1/13/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_97561.3 | |
| IL_6QNR_045 | 1/13/1061:1063, 1/13/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.3 | |
| IL_6QNR_046 | 1/13/1124:1128, 1/13/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_6QNR_349 | 1/13/1124:1129, 1/13/1143:1149 | No text annotation | homologous IL_4LFB_048 IL_89862.1 | |
| IL_6QNR_047 | 1/13/1129:1132, 1/13/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_6QNR_048 | 1/13/1158:1161, 1/13/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_32376.1 | |
| IL_6QNR_049 | 1/13/1247:1253, 1/13/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_6QNR_050 | 1/13/1255:1258, 1/13/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_6QNR_051 | 1/13/1259:1260, 1/13/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_6QNR_052 | 1/13/1260:1262, 1/13/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_34520.3 | |
| IL_6QNR_053 | 1/13/1303:1308, 1/13/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_6QNR_054 | 1/13/1399:1401, 1/13/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6QNR_350 | 1/13/1401:1404, 1/13/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_25873.2 | |
| IL_6QNR_351 | 1/13/1405:1407, 1/13/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_6QNR_352 | 1/13/1407:1409, 1/13/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_29925.2 | |
| IL_6QNR_057 | 1/13/1412:1414, 1/13/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6QNR_058 | 1/13/1416:1419, 1/13/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6QNR_059 | 1/13/1431:1435, 1/13/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.7 | |
| IL_6QNR_060 | 1/13/1435:1437, 1/13/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.3 | |
| IL_6QNR_061 | 1/13/1440:1447, 1/13/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_34117.1 | |
| IL_6QNR_390 | 1/13/1531:1534, 1/4K/38:41 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_71194.2 | |
| IL_6QNR_062 | 1/14/24:30, 1/14/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_6QNR_063 | 1/14/36:37, 1/14/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6QNR_354 | 1/14/43:44, 1/14/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_34520.3 | |
| IL_6QNR_065 | 1/14/81:85, 1/14/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6QNR_066 | 1/14/183:184, 1/14/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6QNR_067 | 1/14/188:194, 1/14/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6QNR_068 | 1/14/239:245, 1/14/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6QNR_070 | 1/14/273:273A, 1/14/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6QNR_071 | 1/14/273F:279, 1/14/361:363 | No text annotation | ||
| IL_6QNR_072 | 1/14/280:284, 1/14/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6QNR_073 | 1/14/288:290, 1/14/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6QNR_074 | 1/14/293:295, 1/14/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6QNR_075 | 1/14/481:484, 1/14/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6QNR_076 | 1/14/564:566, 1/14/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_6QNR_077 | 1/14/606:609A, 1/14/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_6QNR_078 | 1/14/672:674, 1/14/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6QNR_079 | 1/14/674:678, 1/14/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_6QNR_080 | 1/14/697:698, 1/14/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_6QNR_081 | 1/14/702:703, 1/14/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6QNR_082 | 1/14/703:707, 1/14/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6QNR_083 | 1/14/738:741, 1/14/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6QNR_084 | 1/14/775:777, 1/14/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6QNR_085 | 1/14/837:838, 1/14/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6QNR_086 | 1/14/844:846, 1/14/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6QNR_087 | 1/14/846:850, 1/14/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6QNR_356 | 1/14/858:862, 1/14/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9DFE_026 IL_38862.5 | |
| IL_6QNR_089 | 1/14/862:863, 1/14/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_34520.3 | |
| IL_6QNR_090 | 1/14/864:868, 1/14/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6QNR_091 | 1/14/874:879, 1/14/898:903 | Double sheared; A in syn; two near cWW pairs | geometric IL_4N0T_001 IL_82292.2 | |
| IL_6QNR_092 | 1/14/879:882, 1/14/894:898 | No text annotation | ||
| IL_6QNR_093 | 1/14/952:954, 1/14/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6QNR_094 | 1/14/994:996, 1/14/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_6QNR_095 | 1/14/998:1002, 1/14/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_6QNR_096 | 1/14/1004:1013, 1/14/1149:1151 | No text annotation | ||
| IL_6QNR_097 | 1/14/1018:1024, 1/14/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_6QNR_098 | 1/14/1024:1030, 1/14/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6QNR_099 | 1/14/1031:1034, 1/14/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_6QNR_100 | 1/14/1042:1052, 1/14/1107:1113 | No text annotation | ||
| IL_6QNR_102 | 1/14/1196:1198, 1/14/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6QNR_103 | 1/14/1202:1206, 1/14/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6QNR_104 | 1/14/1208:1215, 1/14/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6QNR_105 | 1/14/1219:1221, 1/14/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6QNR_106 | 1/14/1262:1269, 1/14/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6QNR_107 | 1/14/1310:1313, 1/14/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6QNR_108 | 1/14/1319:1323, 1/14/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6QNR_109 | 1/14/1351:1355, 1/14/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6QNR_110 | 1/14/1357:1361, 1/14/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6QNR_111 | 1/14/1415:1416, 1/14/1582:1587 | No text annotation | geometric IL_7RQB_054 NA | |
| IL_6QNR_359 | 1/14/1417:1421, 1/14/1577:1581 | UAA/GAN | homologous IL_9DFE_054 IL_08938.1 | |
| IL_6QNR_113 | 1/14/1433:1435, 1/14/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6QNR_114 | 1/14/1437:1440, 1/14/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6QNR_115 | 1/14/1448:1449A, 1/14/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6QNR_116 | 1/14/1450:1451, 1/14/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6QNR_117 | 1/14/1469:1473, 1/14/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_6QNR_118 | 1/14/1482:1483, 1/14/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6QNR_119 | 1/14/1489:1491, 1/14/1499:1500 | Single bulged A | geometric IL_7RQB_062 NA | |
| IL_6QNR_120 | 1/14/1526:1530, 1/14/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6QNR_121 | 1/14/1651:1656, 1/14/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6QNR_122 | 1/14/1663:1665, 1/14/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6QNR_123 | 1/14/1666:1669, 1/14/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6QNR_360 | 1/14/1666:1674, 1/14/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_6QNR_124 | 1/14/1669:1674, 1/14/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_6QNR_125 | 1/14/1686:1691, 1/14/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6QNR_126 | 1/14/1770:1771, 1/14/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6QNR_127 | 1/14/1798:1804, 1/14/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6QNR_128 | 1/14/1837:1840, 1/14/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6QNR_129 | 1/14/1841:1842, 1/14/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6QNR_130 | 1/14/1846:1849, 1/14/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6QNR_131 | 1/14/1851:1855, 1/14/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_6QNR_361 | 1/14/1856:1860, 1/14/1882:1886 | Triple sheared | homologous IL_9DFE_075 IL_15190.2 | |
| IL_6QNR_133 | 1/14/1933:1934, 1/14/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_6QNR_134 | 1/14/1934:1945, 1/14/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_6QNR_135 | 1/14/2050:2052, 1/14/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_6QNR_136 | 1/14/2054:2057, 1/14/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6QNR_137 | 1/14/2067:2069, 1/14/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.3 | |
| IL_6QNR_138 | 1/14/2070:2071, 1/14/2438:2441 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_6QNR_139 | 1/14/2081:2083, 1/14/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6QNR_140 | 1/14/2085:2087, 1/14/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6QNR_391 | 1/14/2108:2110, 1/14/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_71625.2 | |
| IL_6QNR_363 | 1/14/2110:2120, 1/14/2178:2179 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_6QNR_143 | 1/14/2124:2129, 1/14/2160:2174 | No text annotation | ||
| IL_6QNR_392 | 1/14/2129:2141, 1/14/2150:2160 | No text annotation | ||
| IL_6QNR_145 | 1/14/2297:2299, 1/14/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6QNR_146 | 1/14/2350:2353, 1/14/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6QNR_147 | 1/14/2401:2403, 1/14/2414:2415 | No text annotation | ||
| IL_6QNR_148 | 1/14/2453:2454, 1/14/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6QNR_149 | 1/14/2454:2455, 1/14/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6QNR_150 | 1/14/2457:2459, 1/14/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.8 | |
| IL_6QNR_151 | 1/14/2459:2461, 1/14/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_6QNR_152 | 1/14/2466:2470, 1/14/2480:2484 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.2 | |
| IL_6QNR_153 | 1/14/2507:2508, 1/14/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6QNR_154 | 1/14/2510:2512, 1/14/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_6QNR_155 | 1/14/2512:2513, 1/14/2571:2574 | No text annotation | geometric IL_4WF9_096 IL_44609.2 | |
| IL_6QNR_156 | 1/14/2522:2523, 1/14/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_6QNR_158 | 1/14/2591:2592, 1/14/2601:2603 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_6QNR_159 | 1/14/2636:2640, 1/14/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6QNR_367 | 1/14/2652:2658, 1/14/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_9DFE_102 IL_16458.6 | |
| IL_6QNR_161 | 1/14/2680:2684, 1/14/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6QNR_162 | 1/14/2687:2691, 1/14/2718:2722 | UAA/GAN related, with intercalation | homologous IL_9DFE_104 IL_82016.1 | |
| IL_6QNR_163 | 1/14/2695:2696, 1/14/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6QNR_164 | 1/14/2737:2742, 1/14/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6QNR_165 | 1/14/2838:2839, 1/14/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6QNR_166 | 1/14/2843:2846, 1/14/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6QNR_167 | 1/14/2847:2852, 1/14/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6QNR_169 | 1/16/17:18, 1/16/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_6QNR_170 | 1/16/23:28, 1/16/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6QNR_393 | 1/16/30:31, 1/16/51:54 | No text annotation | homologous IL_9DFE_112 IL_73108.2 | |
| IL_6QNR_172 | 1/16/34:38, 1/16/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6QNR_173 | 1/16/71:79, 1/16/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6QNR_174 | 1/1G/30:32, 1/1G/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.2 | |
| IL_6QNR_175 | 1/1G/44:45, 1/1G/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_6QNR_176 | 1/1G/47:52, 1/1G/359:361 | No text annotation | homologous IL_4LFB_003 IL_32983.2 | |
| IL_6QNR_177 | 1/1G/54:56, 1/1G/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_6QNR_178 | 1/1G/63:66, 1/1G/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
| IL_6QNR_179 | 1/1G/67:69, 1/1G/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.3 | |
| IL_6QNR_369 | 1/1G/129:131, 1/1G/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_6QNR_181 | 1/1G/132:136, 1/1G/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_6QNR_182 | 1/1G/148:153, 1/1G/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_6QNR_370 | 1/1G/186:186, 1/1G/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.3 | |
| IL_6QNR_184 | 1/1G/242:247, 1/1G/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_6QNR_185 | 1/1G/249:252, 1/1G/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_6QNR_186 | 1/1G/292:293, 1/1G/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6QNR_187 | 1/1G/367:369, 1/1G/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.3 | |
| IL_6QNR_188 | 1/1G/371:375, 1/1G/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_6QNR_189 | 1/1G/375:376, 1/1G/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_6QNR_190 | 1/1G/409:416, 1/1G/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_6QNR_191 | 1/1G/446:450, 1/1G/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_6QNR_192 | 1/1G/450:455, 1/1G/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_6QNR_193 | 1/1G/504:511, 1/1G/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_6QNR_194 | 1/1G/515:521, 1/1G/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_6QNR_195 | 1/1G/569:575, 1/1G/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6QNR_196 | 1/1G/580:584, 1/1G/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_6QNR_197 | 1/1G/594:596, 1/1G/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.8 | |
| IL_6QNR_198 | 1/1G/597:598, 1/1G/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_6QNR_199 | 1/1G/605:612, 1/1G/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_6QNR_200 | 1/1G/654:655, 1/1G/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_6QNR_201 | 1/1G/657:658, 1/1G/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_6QNR_202 | 1/1G/662:666, 1/1G/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.2 | |
| IL_6QNR_371 | 1/1G/673:677, 1/1G/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_6QNR_204 | 1/1G/683:688, 1/1G/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6QNR_205 | 1/1G/774:778, 1/1G/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6QNR_206 | 1/1G/779:783, 1/1G/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_6QNR_207 | 1/1G/887:894, 1/1G/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_6QNR_208 | 1/1G/922:923, 1/1G/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_6QNR_209 | 1/1G/925:927, 1/1G/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_6QNR_210 | 1/1G/933:935, 1/1G/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_6QNR_211 | 1/1G/953:954, 1/1G/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.3 | |
| IL_6QNR_212 | 1/1G/993:997, 1/1G/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_6QNR_213 | 1/1G/1048:1050, 1/1G/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.3 | |
| IL_6QNR_394 | 1/1G/1052:1056, 1/1G/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_6QNR_216 | 1/1G/1057:1058, 1/1G/1199:1203 | Minor groove platform | geometric IL_5J7L_048 NA | |
| IL_6QNR_373 | 1/1G/1059:1061, 1/1G/1195:1198 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.3 | |
| IL_6QNR_217 | 1/1G/1060:1061, 1/1G/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_97561.3 | |
| IL_6QNR_218 | 1/1G/1061:1063, 1/1G/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.3 | |
| IL_6QNR_219 | 1/1G/1124:1129, 1/1G/1143:1149 | No text annotation | homologous IL_4LFB_048 IL_89862.1 | |
| IL_6QNR_395 | 1/1G/1124:1132, 1/1G/1142:1149 | No text annotation | ||
| IL_6QNR_220 | 1/1G/1129:1132, 1/1G/1142:1143 | Minor groove platform | geometric IL_5J7L_052 NA | |
| IL_6QNR_221 | 1/1G/1247:1253, 1/1G/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_6QNR_222 | 1/1G/1255:1258, 1/1G/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_6QNR_396 | 1/1G/1259:1262, 1/1G/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_58355.2 | |
| IL_6QNR_224 | 1/1G/1303:1308, 1/1G/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_6QNR_225 | 1/1G/1399:1401, 1/1G/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_6QNR_377 | 1/1G/1401:1404, 1/1G/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_25873.2 | |
| IL_6QNR_378 | 1/1G/1405:1407, 1/1G/1494:1496 | Isolated non-canonical cWW pair | homologous IL_4LFB_069 IL_01003.3 | |
| IL_6QNR_379 | 1/1G/1407:1409, 1/1G/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_29925.2 | |
| IL_6QNR_228 | 1/1G/1412:1414, 1/1G/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6QNR_229 | 1/1G/1416:1419, 1/1G/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6QNR_230 | 1/1G/1431:1435, 1/1G/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.7 | |
| IL_6QNR_231 | 1/1G/1435:1437, 1/1G/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.3 | |
| IL_6QNR_232 | 1/1G/1440:1447, 1/1G/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_34117.1 | |
| IL_6QNR_233 | 1/1H/24:30, 1/1H/536:542 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6QNR_234 | 1/1H/36:37, 1/1H/469:471 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6QNR_235 | 1/1H/42:43, 1/1H/462:464 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6QNR_236 | 1/1H/80:84, 1/1H/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6QNR_237 | 1/1H/173:174, 1/1H/202:204 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6QNR_238 | 1/1H/178:184, 1/1H/191:198 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6QNR_239 | 1/1H/229:235, 1/1H/243:248 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6QNR_240 | 1/1H/292:293, 1/1H/393:395 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6QNR_242 | 1/1H/305:309, 1/1H/382:385 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6QNR_243 | 1/1H/313:315, 1/1H/375:378 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6QNR_244 | 1/1H/318:320, 1/1H/368:372 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6QNR_245 | 1/1H/508:511, 1/1H/522:535 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6QNR_246 | 1/1H/588:590, 1/1H/599:601 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_6QNR_247 | 1/1H/630:634, 1/1H/644:648 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_6QNR_248 | 1/1H/720:722, 1/1H/854:856 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6QNR_249 | 1/1H/722:726, 1/1H/847:854 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_6QNR_250 | 1/1H/745:746, 1/1H/811:813 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6QNR_251 | 1/1H/750:751, 1/1H/776:778 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_6QNR_252 | 1/1H/751:755, 1/1H/772:776 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6QNR_253 | 1/1H/786:789, 1/1H/804:806 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6QNR_254 | 1/1H/823:825, 1/1H/835:839 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6QNR_255 | 1/1H/885:886, 1/1H/986:988 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6QNR_256 | 1/1H/892:894, 1/1H/977:980 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_6QNR_380 | 1/1H/892:898, 1/1H/974:980 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6QNR_257 | 1/1H/894:898, 1/1H/974:977 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_6QNR_258 | 1/1H/906:910, 1/1H/962:966 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6QNR_259 | 1/1H/910:911, 1/1H/960:962 | Minor groove platform | homologous IL_4WF9_032 IL_34520.3 | |
| IL_6QNR_260 | 1/1H/912:916, 1/1H/956:959 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6QNR_381 | 1/1H/918:920, 1/1H/952:954 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_6QNR_261 | 1/1H/923:927, 1/1H/945:949 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_6QNR_382 | 1/1H/923:931, 1/1H/940:949 | No text annotation | ||
| IL_6QNR_262 | 1/1H/927:931, 1/1H/940:945 | No text annotation | ||
| IL_6QNR_263 | 1/1H/998:1000, 1/1H/1009:1011 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6QNR_264 | 1/1H/1041:1043, 1/1H/1206:1207 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_6QNR_265 | 1/1H/1045:1049, 1/1H/1200:1204 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6QNR_266 | 1/1H/1051:1058, 1/1H/1197:1198 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6QNR_267 | 1/1H/1058:1060, 1/1H/1196:1197 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_6QNR_268 | 1/1H/1065:1071, 1/1H/1186:1191 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_6QNR_269 | 1/1H/1071:1077, 1/1H/1171:1186 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6QNR_270 | 1/1H/1078:1081, 1/1H/1168:1170 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6QNR_397 | 1/1H/1090:1098, 1/1H/1155:1159 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_6QNR_273 | 1/1H/1134:1138, 1/1H/1147:1149 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_6QNR_274 | 1/1H/1242:1244, 1/1H/1294:1297 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6QNR_275 | 1/1H/1248:1252, 1/1H/1287:1290 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6QNR_276 | 1/1H/1254:1261, 1/1H/1281:1285 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6QNR_277 | 1/1H/1265:1267, 1/1H/1276:1277 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6QNR_278 | 1/1H/1309:1316, 1/1H/2034:2040 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6QNR_279 | 1/1H/1357:1360, 1/1H/1650:1651 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6QNR_280 | 1/1H/1366:1370, 1/1H/1378:1380 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6QNR_281 | 1/1H/1398:1402, 1/1H/1423:1427 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6QNR_282 | 1/1H/1404:1408, 1/1H/1417:1421 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6QNR_283 | 1/1H/1462:1463, 1/1H/1630:1634 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6QNR_284 | 1/1H/1464:1468, 1/1H/1625:1629 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6QNR_285 | 1/1H/1480:1482, 1/1H/1605:1608 | No text annotation | homologous IL_7A0S_052 IL_38565.2 | |
| IL_6QNR_286 | 1/1H/1484:1487, 1/1H/1599:1603 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6QNR_287 | 1/1H/1496:1498, 1/1H/1510:1511 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6QNR_288 | 1/1H/1499:1500, 1/1H/1507:1509 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6QNR_289 | 1/1H/1517:1521, 1/1H/1567:1570 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_6QNR_290 | 1/1H/1529:1530, 1/1H/1553:1559 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6QNR_291 | 1/1H/1536:1538, 1/1H/1546:1547 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6QNR_292 | 1/1H/1573:1577, 1/1H/1588:1594 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6QNR_293 | 1/1H/1699:1704, 1/1H/2027:2029 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6QNR_294 | 1/1H/1711:1713, 1/1H/2018:2020 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6QNR_295 | 1/1H/1714:1717, 1/1H/2016:2017 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6QNR_383 | 1/1H/1714:1722, 1/1H/2013:2017 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_6QNR_296 | 1/1H/1717:1722, 1/1H/2013:2016 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_6QNR_297 | 1/1H/1734:1739, 1/1H/1744:1750 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6QNR_298 | 1/1H/1802:1803, 1/1H/2003:2005 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6QNR_299 | 1/1H/1830:1836, 1/1H/1845:1853 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6QNR_300 | 1/1H/1869:1872, 1/1H/1925:1926 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6QNR_301 | 1/1H/1873:1874, 1/1H/1921:1924 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6QNR_302 | 1/1H/1878:1881, 1/1H/1916:1917 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6QNR_303 | 1/1H/1883:1887, 1/1H/1910:1914 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_6QNR_304 | 1/1H/1888:1892, 1/1H/1905:1909 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6QNR_305 | 1/1H/1956:1957, 1/1H/1987:1990 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6QNR_306 | 1/1H/1957:1968, 1/1H/1984:1987 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_6QNR_307 | 1/1H/2073:2075, 1/1H/2630:2631 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6QNR_308 | 1/1H/2077:2080, 1/1H/2624:2628 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6QNR_309 | 1/1H/2090:2092, 1/1H/2455:2456 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6QNR_310 | 1/1H/2093:2094, 1/1H/2451:2454 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6QNR_311 | 1/1H/2104:2106, 1/1H/2249:2252 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6QNR_312 | 1/1H/2108:2110, 1/1H/2245:2247 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6QNR_313 | 1/1H/2131:2133, 1/1H/2202:2204 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_68118.3 | |
| IL_6QNR_384 | 1/1H/2131:2143, 1/1H/2201:2204 | No text annotation | ||
| IL_6QNR_314 | 1/1H/2133:2143, 1/1H/2201:2202 | No text annotation | ||
| IL_6QNR_385 | 1/1H/2147:2162, 1/1H/2175:2197 | No text annotation | ||
| IL_6QNR_315 | 1/1H/2310:2312, 1/1H/2330:2334 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6QNR_316 | 1/1H/2363:2366, 1/1H/2377:2380 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6QNR_317 | 1/1H/2414:2416, 1/1H/2427:2428 | Major groove platform | homologous IL_9DFE_090 IL_48076.8 | |
| IL_6QNR_318 | 1/1H/2466:2467, 1/1H/2511:2513 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6QNR_319 | 1/1H/2467:2468, 1/1H/2509:2511 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6QNR_320 | 1/1H/2470:2472, 1/1H/2506:2507 | Major groove platform | geometric IL_4WF9_091 IL_48076.8 | |
| IL_6QNR_321 | 1/1H/2472:2474, 1/1H/2502:2506 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6QNR_322 | 1/1H/2479:2483, 1/1H/2493:2497 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6QNR_323 | 1/1H/2520:2521, 1/1H/2593:2595 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6QNR_324 | 1/1H/2523:2525, 1/1H/2587:2591 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6QNR_325 | 1/1H/2525:2526, 1/1H/2584:2587 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6QNR_326 | 1/1H/2535:2536, 1/1H/2553:2556 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_6QNR_328 | 1/1H/2604:2605, 1/1H/2614:2616 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6QNR_329 | 1/1H/2649:2653, 1/1H/2788:2796 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6QNR_330 | 1/1H/2665:2671, 1/1H/2676:2681 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6QNR_331 | 1/1H/2693:2697, 1/1H/2739:2741 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6QNR_332 | 1/1H/2700:2704, 1/1H/2732:2736 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6QNR_333 | 1/1H/2708:2709, 1/1H/2724:2728 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6QNR_334 | 1/1H/2751:2756, 1/1H/2776:2781 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_6QNR_335 | 1/1H/2849:2850, 1/1H/2889:2891 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6QNR_336 | 1/1H/2854:2857, 1/1H/2881:2885 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6QNR_337 | 1/1H/2858:2863, 1/1H/2876:2880 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6QNR_338 | 1/1J/17:18, 1/1J/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
| IL_6QNR_339 | 1/1J/23:28, 1/1J/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6QNR_398 | 1/1J/30:31, 1/1J/51:54 | No text annotation | homologous IL_9DFE_112 IL_73108.2 | |
| IL_6QNR_386 | 1/1J/34:38, 1/1J/44:48 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_6QNR_342 | 1/1J/71:79, 1/1J/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6QNR_343 | No text annotation | ||
| IL_6QNR_345 | No text annotation | ||
| IL_6QNR_010 | No text annotation | ||
| IL_6QNR_030 | No text annotation | ||
| IL_6QNR_037 | No text annotation | ||
| IL_6QNR_039 | No text annotation | ||
| IL_6QNR_041 | Isolated non-canonical cWW pair | ||
| IL_6QNR_055 | No text annotation | ||
| IL_6QNR_056 | No text annotation | ||
| IL_6QNR_353 | No text annotation | ||
| IL_6QNR_064 | Major groove platform with extra cWW | ||
| IL_6QNR_069 | No text annotation | ||
| IL_6QNR_355 | No text annotation | ||
| IL_6QNR_088 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6QNR_357 | No text annotation | ||
| IL_6QNR_358 | Isolated non-canonical cWW pair | ||
| IL_6QNR_101 | No text annotation | ||
| IL_6QNR_112 | No text annotation | ||
| IL_6QNR_132 | No text annotation | ||
| IL_6QNR_362 | Partly complementary | ||
| IL_6QNR_141 | Tandem non-canonical cWW pairs | ||
| IL_6QNR_142 | Isolated near basepair | ||
| IL_6QNR_364 | No text annotation | ||
| IL_6QNR_144 | No text annotation | ||
| IL_6QNR_365 | No text annotation | ||
| IL_6QNR_366 | No text annotation | ||
| IL_6QNR_157 | No text annotation | ||
| IL_6QNR_160 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6QNR_368 | No text annotation | ||
| IL_6QNR_168 | No text annotation | ||
| IL_6QNR_171 | No text annotation | ||
| IL_6QNR_180 | Isolated non-canonical cWW pair | ||
| IL_6QNR_183 | No text annotation | ||
| IL_6QNR_203 | No text annotation | ||
| IL_6QNR_372 | No text annotation | ||
| IL_6QNR_214 | Stack and bulge | ||
| IL_6QNR_215 | No text annotation | ||
| IL_6QNR_374 | No text annotation | ||
| IL_6QNR_375 | No text annotation | ||
| IL_6QNR_223 | Double sheared with non-canonical cWW | ||
| IL_6QNR_376 | No text annotation | ||
| IL_6QNR_226 | No text annotation | ||
| IL_6QNR_227 | No text annotation | ||
| IL_6QNR_241 | No text annotation | ||
| IL_6QNR_271 | No text annotation | ||
| IL_6QNR_272 | No text annotation | ||
| IL_6QNR_327 | No text annotation | ||
| IL_6QNR_340 | No text annotation | ||
| IL_6QNR_341 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6QNR_001 | 1/13/46:47, 1/13/361:367, 1/13/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6QNR_053 | 1/13/46:52, 1/13/359:367, 1/13/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6QNR_002 | 1/13/586:588, 1/13/651:654, 1/13/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_6QNR_054 | 1/13/586:588, 1/13/651:655, 1/13/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_6QNR_003 | 1/13/672:673, 1/13/717:725, 1/13/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6QNR_004 | 1/13/826:829, 1/13/857:861, 1/13/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_6QNR_005 | 1/13/936:939, 1/13/1344:1350, 1/13/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6QNR_006 | 1/13/943:946, 1/13/1235:1237, 1/13/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_6QNR_007 | 1/13/955:962, 1/13/973:984, 1/13/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_6QNR_008 | 1/13/990:993, 1/13/1045:1047, 1/13/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6QNR_055 | 1/13/990:997, 1/13/1044:1047, 1/13/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_6QNR_079 | 1/13/1003:1007, 1/13/1022:1028, 1/13/1033:1037 | No text annotation | ||
| J3_6QNR_010 | 1/13/1063:1068, 1/13/1107:1113, 1/13/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_6QNR_056 | 1/13/1073:1074, 1/13/1083:1086, 1/13/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6QNR_012 | 1/13/1116:1118, 1/13/1155:1158, 1/13/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.5 | |
| J3_6QNR_057 | 1/13/1116:1118, 1/13/1155:1161, 1/13/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_6QNR_013 | 1/13/1237:1241, 1/13/1296:1303, 1/13/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_6QNR_014 | 1/14/30:31, 1/14/474:481, 1/14/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6QNR_058 | 1/14/30:31, 1/14/474:484, 1/14/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6QNR_059 | 1/14/32:35, 1/14/445:461, 1/14/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6QNR_015 | 1/14/56:57, 1/14/70:76, 1/14/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6QNR_060 | 1/14/269:270, 1/14/270:271, 1/14/366:370 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_6QNR_017 | 1/14/683:689, 1/14/773:775, 1/14/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_6QNR_018 | 1/14/698:700, 1/14/732:736, 1/14/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6QNR_019 | 1/14/1298:1303, 1/14/1625:1627, 1/14/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6QNR_020 | 1/14/1306:1309, 1/14/1605:1611, 1/14/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6QNR_021 | 1/14/1344:1350, 1/14/1381:1385, 1/14/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6QNR_061 | 1/14/1424:1429, 1/14/1564:1565, 1/14/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_6QNR_022 | 1/14/2091:2093, 1/14/2196:2205, 1/14/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6QNR_062 | 1/14/2282:2284, 1/14/2384:2395, 1/14/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_04772.1 | |
| J3_6QNR_023 | 1/14/2295:2297, 1/14/2321:2323, 1/14/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6QNR_024 | 1/14/2517:2520, 1/14/2545:2547, 1/14/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6QNR_025 | 1/14/2789:2792, 1/14/2804:2811, 1/14/2889:2894 | No text annotation | ||
| J3_6QNR_026 | 1/14/2814:2815, 1/14/2831:2836, 1/14/2882:2886 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_6QNR_063 | 1/16/11:16, 1/16/68:69, 1/16/107:109 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_6QNR_028 | 1/1G/46:47, 1/1G/361:367, 1/1G/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6QNR_064 | 1/1G/46:52, 1/1G/359:367, 1/1G/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6QNR_029 | 1/1G/586:588, 1/1G/651:654, 1/1G/754:755 | No text annotation | geometric J3_4LFB_011 J3_01633.1 | |
| J3_6QNR_065 | 1/1G/586:588, 1/1G/651:655, 1/1G/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_6QNR_030 | 1/1G/672:673, 1/1G/717:725, 1/1G/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6QNR_031 | 1/1G/826:829, 1/1G/857:861, 1/1G/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_6QNR_080 | 1/1G/936:939, 1/1G/1344:1350, 1/1G/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6QNR_032 | 1/1G/943:946, 1/1G/1235:1237, 1/1G/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_6QNR_081 | 1/1G/955:962, 1/1G/973:984, 1/1G/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_6QNR_034 | 1/1G/990:993, 1/1G/1045:1047, 1/1G/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6QNR_082 | 1/1G/990:997, 1/1G/1044:1047, 1/1G/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_6QNR_083 | 1/1G/1003:1006, 1/1G/1023:1028A, 1/1G/1032B:1037 | No text annotation | ||
| J3_6QNR_036 | 1/1G/1063:1068, 1/1G/1107:1113, 1/1G/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_6QNR_084 | 1/1G/1073:1074, 1/1G/1083:1086, 1/1G/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6QNR_038 | 1/1G/1116:1118, 1/1G/1155:1161, 1/1G/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_6QNR_039 | 1/1G/1237:1241, 1/1G/1296:1303, 1/1G/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_6QNR_040 | 1/1H/30:31, 1/1H/501:508, 1/1H/535:536 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6QNR_070 | 1/1H/30:31, 1/1H/501:511, 1/1H/522:536 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_6QNR_071 | 1/1H/32:35, 1/1H/472:488, 1/1H/495:500 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6QNR_041 | 1/1H/55:56, 1/1H/69:75, 1/1H/108:112 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6QNR_042 | 1/1H/259:263, 1/1H/283:290, 1/1H/397:398 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6QNR_072 | 1/1H/322:326, 1/1H/341:350, 1/1H/362:366 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_6QNR_043 | 1/1H/731:737, 1/1H/821:823, 1/1H/839:842 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_6QNR_044 | 1/1H/746:748, 1/1H/780:784, 1/1H/808:811 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6QNR_045 | 1/1H/1345:1350, 1/1H/1672:1674, 1/1H/1687:1690 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6QNR_046 | 1/1H/1353:1356, 1/1H/1652:1658, 1/1H/1667:1669 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6QNR_047 | 1/1H/1391:1397, 1/1H/1428:1432, 1/1H/1449:1450 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6QNR_073 | 1/1H/1471:1476, 1/1H/1612:1613, 1/1H/1616:1622 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_6QNR_048 | 1/1H/2114:2116, 1/1H/2219:2223, 1/1H/2236:2241 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6QNR_074 | 1/1H/2295:2297, 1/1H/2397:2408, 1/1H/2434:2440 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_6QNR_049 | 1/1H/2308:2310, 1/1H/2334:2336, 1/1H/2345:2350 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6QNR_050 | 1/1H/2530:2533, 1/1H/2558:2560, 1/1H/2574:2580 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6QNR_051 | 1/1H/2825:2826, 1/1H/2842:2847, 1/1H/2893:2897 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_6QNR_052 | 1/1J/11:16, 1/1J/68:69, 1/1J/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_6QNR_085 | 1/1K/2:27, 1/1K/43:51, 1/1K/63:71 | No text annotation | ||
| J3_6QNR_076 | 1/1K/2:28, 1/1K/42:51, 1/1K/63:71 | No text annotation | ||
| J3_6QNR_077 | 1/3K/4:29, 1/3K/41:52, 1/3K/62:69 | No text annotation | ||
| J3_6QNR_078 | 1/5K/7:28, 1/5K/42:50, 1/5K/64:66 | No text annotation | ||
| J4_6QNR_001 | 1/13/115:122, 1/13/239:240, 1/13/286:289, 1/13/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_6QNR_002 | 1/13/142:144, 1/13/178:183, 1/13/194:198, 1/13/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6QNR_003 | 1/13/575:577, 1/13/764:769, 1/13/810:821, 1/13/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_6QNR_004 | 1/14/268:269, 1/14/370:375, 1/14/399:406, 1/14/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_6QNR_005 | 1/14/297:301, 1/14/316:319, 1/14/323:325, 1/14/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_6QNR_006 | 1/14/1270:1276, 1/14/1294:1295, 1/14/1645:1648, 1/14/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_6QNR_007 | 1/14/1310:1314, 1/14/1338:1343, 1/14/1404:1405, 1/14/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_6QNR_008 | 1/14/1313:1314, 1/14/1338:1343, 1/14/1404:1405, 1/14/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_6QNR_009 | 1/14/1444:1445, 1/14/1466:1467, 1/14/1525:1526, 1/14/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_6QNR_010 | 1/14/1772:1776, 1/14/1788:1792, 1/14/1827:1830, 1/14/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_6QNR_011 | 1/14/1833:1835, 1/14/1905:1906, 1/14/1924:1933, 1/14/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6QNR_012 | 1/14/2285:2289, 1/14/2343:2347, 1/14/2370:2372, 1/14/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_6QNR_013 | 1/14/2643:2646, 1/14/2674:2676, 1/14/2731:2735, 1/14/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_6QNR_014 | 1/1G/115:122, 1/1G/239:240, 1/1G/286:289, 1/1G/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_6QNR_032 | 1/1G/142:144, 1/1G/178:183, 1/1G/194:198, 1/1G/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6QNR_016 | 1/1G/575:577, 1/1G/764:769, 1/1G/810:821, 1/1G/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_6QNR_017 | 1/1H/258:259, 1/1H/398:403, 1/1H/427:434, 1/1H/449:452 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_6QNR_018 | 1/1H/322:326, 1/1H/341:344, 1/1H/348:350, 1/1H/362:366 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_6QNR_019 | 1/1H/1317:1323, 1/1H/1341:1342, 1/1H/1693:1696, 1/1H/2032:2033 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_6QNR_020 | 1/1H/1357:1361, 1/1H/1385:1390, 1/1H/1451:1452, 1/1H/1644:1651 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_6QNR_021 | 1/1H/1360:1361, 1/1H/1385:1390, 1/1H/1451:1452, 1/1H/1644:1650 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_6QNR_022 | 1/1H/1491:1493, 1/1H/1514:1515, 1/1H/1572:1573, 1/1H/1594:1595 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_6QNR_023 | 1/1H/1804:1808, 1/1H/1820:1824, 1/1H/1859:1862, 1/1H/1998:2002 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_6QNR_024 | 1/1H/1865:1867, 1/1H/1928:1929, 1/1H/1947:1956, 1/1H/1990:1995 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6QNR_025 | 1/1H/2298:2302, 1/1H/2356:2360, 1/1H/2383:2385, 1/1H/2394:2396 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_6QNR_026 | 1/1H/2656:2659, 1/1H/2687:2689, 1/1H/2745:2749, 1/1H/2783:2785 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_6QNR_033 | 1/1K/2:13, 1/1K/22:27, 1/1K/43:51, 1/1K/63:71 | No text annotation | ||
| J4_6QNR_028 | 1/2K/7:10, 1/2K/25:27, 1/2K/43:49, 1/2K/65:66 | No text annotation | homologous J4_5J8B_014 NA | |
| J4_6QNR_029 | 1/2L/7:10, 1/2L/25:27, 1/2L/43:49, 1/2L/65:66 | tRNA junction | homologous J4_5WT1_002 J4_40477.2 | |
| J4_6QNR_030 | 1/3L/3:12, 1/3L/23:27, 1/3L/43:49, 1/3L/65:70 | No text annotation | ||
| J4_6QNR_034 | 1/5K/7:10, 1/5K/25:28, 1/5K/42:49, 1/5K/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J5_6QNR_001 | 1/13/36:39, 1/13/403:406, 1/13/436:442, 1/13/492:500, 1/13/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6QNR_002 | 1/13/58:61, 1/13/106:113, 1/13/314:316, 1/13/337:339, 1/13/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_6QNR_003 | 1/14/47:54, 1/14/116:121, 1/14/130:131, 1/14/148:150, 1/14/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_6QNR_004 | 1/14/268:270, 1/14/270:271, 1/14/366:375, 1/14/399:406, 1/14/421:424 | No text annotation | ||
| J5_6QNR_005 | 1/14/531:533, 1/14/560:564, 1/14/577:579, 1/14/1261:1262, 1/14/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_6QNR_006 | 1/14/584:589, 1/14/668:671, 1/14/809:812, 1/14/1195:1196, 1/14/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_6QNR_007 | 1/14/1674:1682, 1/14/1706:1707, 1/14/1751:1752, 1/14/1756:1764, 1/14/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_6QNR_008 | 1/14/2057:2064, 1/14/2446:2453, 1/14/2500:2507, 1/14/2582:2588, 1/14/2606:2611 | No text annotation | ||
| J5_6QNR_009 | 1/14/2074:2077, 1/14/2243:2246, 1/14/2258:2259, 1/14/2281:2282, 1/14/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_6QNR_010 | 1/1G/36:39, 1/1G/403:406, 1/1G/436:442, 1/1G/492:500, 1/1G/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6QNR_011 | 1/1G/58:61, 1/1G/106:113, 1/1G/314:316, 1/1G/337:339, 1/1G/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_6QNR_012 | 1/1H/46:53, 1/1H/114:119, 1/1H/128:129, 1/1H/148:150, 1/1H/166:168 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_6QNR_013 | 1/1H/258:263, 1/1H/283:290, 1/1H/397:403, 1/1H/427:434, 1/1H/449:452 | No text annotation | ||
| J5_6QNR_014 | 1/1H/557:559, 1/1H/584:588, 1/1H/601:603, 1/1H/1308:1309, 1/1H/2040:2041 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_6QNR_015 | 1/1H/608:613, 1/1H/716:719, 1/1H/857:860, 1/1H/1241:1242, 1/1H/1297:1303 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_6QNR_016 | 1/1H/625:628, 1/1H/650:654, 1/1H/661:664, 1/1H/676:682, 1/1H/699:704 | No text annotation | ||
| J5_6QNR_017 | 1/1H/1722:1730, 1/1H/1754:1755, 1/1H/1783:1784, 1/1H/1788:1796, 1/1H/2011:2013 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_6QNR_020 | 1/1H/2080:2087, 1/1H/2459:2466, 1/1H/2513:2519, 1/1H/2596:2601, 1/1H/2619:2624 | No text annotation | ||
| J5_6QNR_019 | 1/1H/2097:2100, 1/1H/2256:2259, 1/1H/2271:2272, 1/1H/2294:2295, 1/1H/2440:2448 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J6_6QNR_001 | 1/14/45:46, 1/14/179:183, 1/14/214:224, 1/14/231:235, 1/14/262:266, 1/14/426:433 | No text annotation | ||
| J6_6QNR_002 | 1/14/2074:2077, 1/14/2243:2246, 1/14/2258:2259, 1/14/2281:2284, 1/14/2384:2395, 1/14/2421:2435 | No text annotation | ||
| J6_6QNR_003 | 1/1H/44:45, 1/1H/169:173, 1/1H/204:214, 1/1H/221:225, 1/1H/252:256, 1/1H/454:461 | No text annotation | ||
| J6_6QNR_004 | 1/1H/2097:2100, 1/1H/2256:2259, 1/1H/2271:2272, 1/1H/2294:2297, 1/1H/2397:2408, 1/1H/2434:2448 | No text annotation | ||
| J7_6QNR_001 | 1/14/817:822, 1/14/835:836, 1/14/943:946, 1/14/971:976, 1/14/987:991, 1/14/1163:1164, 1/14/1185:1190 | No text annotation | ||
| J7_6QNR_002 | 1/1H/865:870, 1/1H/883:884, 1/1H/989:992, 1/1H/1017:1023, 1/1H/1034:1038, 1/1H/1210:1211, 1/1H/1231:1236 | No text annotation | ||
| J8_6QNR_002 | 1/1H/8:15, 1/1H/551:557, 1/1H/2041:2046, 1/1H/2063:2066, 1/1H/2638:2643, 1/1H/2802:2805, 1/1H/2817:2822, 1/1H/2900:2905 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6QNR_009 | No text annotation | ||
| J3_6QNR_011 | No text annotation | ||
| J3_6QNR_016 | No text annotation | ||
| J3_6QNR_027 | No text annotation | ||
| J3_6QNR_066 | No text annotation | ||
| J3_6QNR_033 | No text annotation | ||
| J3_6QNR_067 | No text annotation | ||
| J3_6QNR_068 | No text annotation | ||
| J3_6QNR_069 | No text annotation | ||
| J3_6QNR_035 | No text annotation | ||
| J3_6QNR_037 | No text annotation | ||
| J3_6QNR_075 | No text annotation | ||
| J4_6QNR_015 | No text annotation | ||
| J4_6QNR_027 | No text annotation | ||
| J4_6QNR_031 | No text annotation | ||
| J5_6QNR_018 | No text annotation | ||
| J8_6QNR_001 | No text annotation |
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