HL_6QT0_005

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6QT0|1|A|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.1282

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6QT0|1|A|U|194
6QT0|1|A|U|195
6QT0|1|A|G|196
6QT0|1|A|G|197
6QT0|1|A|A|198
6QT0|1|A|A|199
6QT0|1|A|C|200
6QT0|1|A|A|201

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain X

60S ribosomal protein L26-A

Chain e

60S ribosomal protein L32