Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6QT0_0011/A/38:45No text annotation
geometric
HL_5TBW_001
NA
HL_6QT0_0021/A/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_6QT0_0031/A/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_6QT0_0041/A/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_6QT0_0051/A/194:201T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_6QT0_0061/A/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_6QT0_0071/A/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6QT0_0081/A/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_6QT0_0091/A/303:312Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_6QT0_0101/A/357:362GNRA
homologous
HL_8C3A_010
NA
HL_6QT0_0111/A/382:387GNRA
homologous
HL_8C3A_011
NA
HL_6QT0_0121/A/541:550No text annotation
homologous
HL_8CRE_012
HL_27483.1
HL_6QT0_0131/A/599:604GNRA
homologous
HL_5TBW_013
NA
HL_6QT0_0141/A/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6QT0_0781/A/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_6QT0_0161/A/707:712GNRA
homologous
HL_5TBW_016
NA
HL_6QT0_0171/A/732:737GNRA
homologous
HL_5TBW_017
NA
HL_6QT0_0791/A/758:773No text annotation
HL_6QT0_0181/A/763:768No text annotation
homologous
HL_5TBW_018
NA
HL_6QT0_0191/A/844:849GNRA
homologous
HL_8C3A_019
NA
HL_6QT0_0201/A/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_6QT0_0211/A/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_6QT0_0221/A/958:963Externally structured
homologous
HL_5TBW_022
NA
HL_6QT0_0841/A/1023:1029GNRA
homologous
HL_8P9A_232
HL_37824.8
HL_6QT0_0851/A/1074:1084No text annotation
HL_6QT0_0241/A/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_6QT0_0251/A/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_6QT0_0261/A/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_6QT0_0271/A/1239:1249No text annotation
geometric
HL_5TBW_027
NA
HL_6QT0_0281/A/1266:1275No text annotation
geometric
HL_5TBW_028
NA
HL_6QT0_0291/A/1347:1357No text annotation
HL_6QT0_0301/A/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_6QT0_0811/A/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6QT0_0321/A/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_6QT0_0331/A/1544:1549GNRA variation
homologous
HL_5TBW_033
NA
HL_6QT0_0341/A/1565:1574No text annotation
HL_6QT0_0351/A/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_6QT0_0361/A/1634:1639GNRA
homologous
HL_5TBW_036
NA
HL_6QT0_0371/A/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_6QT0_0381/A/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_6QT0_0391/A/1759:1766No text annotation
geometric
HL_7EL1_002
HL_49922.4
HL_6QT0_0401/A/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_6QT0_0411/A/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_6QT0_0421/A/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_6QT0_0431/A/1923:1928UNCG
geometric
HL_4LFB_009
HL_34617.5
HL_6QT0_0451/A/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_6QT0_0461/A/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_6QT0_0471/A/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_6QT0_0481/A/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_6QT0_0491/A/2253:2263No text annotation
HL_6QT0_0501/A/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_6QT0_0861/A/2369:2378No text annotation
homologous
HL_8CRE_049
HL_61996.3
HL_6QT0_0521/A/2451:2496No text annotation
HL_6QT0_0531/A/2568:2573No text annotation
homologous
HL_8C3A_054
NA
HL_6QT0_0541/A/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_6QT0_0551/A/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_6QT0_0561/A/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_6QT0_0571/A/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6QT0_0581/A/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_6QT0_0591/A/2744:2749GNRA
homologous
HL_5TBW_059
NA
HL_6QT0_0601/A/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_6QT0_0611/A/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_6QT0_0621/A/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_6QT0_0631/A/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_6QT0_0641/A/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_6QT0_0651/A/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_6QT0_0661/A/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_6QT0_0671/A/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_6QT0_0681/A/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_6QT0_0701/A/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_6QT0_0711/A/3350:3353Mini UNCG
homologous
HL_5TBW_071
NA
HL_6QT0_0831/x/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6QT0_0721/x/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_6QT0_0731/x/88:93GNRA
homologous
HL_5TBW_186
NA
HL_6QT0_0741/y/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_6QT0_0751/y/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_6QT0_0761/y/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_6QT0_0771/y/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_6QT0_015No text annotation
HL_6QT0_023Anticodon loop related
HL_6QT0_080No text annotation
HL_6QT0_031No text annotation
HL_6QT0_044No text annotation
HL_6QT0_082No text annotation
HL_6QT0_051No text annotation
HL_6QT0_069No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6QT0_0011/A/7:8,
1/y/150:152
Single bulged C
homologous
IL_8C3A_002
NA
IL_6QT0_0021/A/13:15,
1/y/144:145
Single bulged U
homologous
IL_8C3A_003
NA
IL_6QT0_0031/A/27:28,
1/A/56:58
No text annotation
homologous
IL_8C3A_004
NA
IL_6QT0_0041/A/31:38,
1/A/45:53
tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_6QT0_0051/A/82:89,
1/A/97:103
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_6QT0_0061/A/123:124,
1/A/144:149
No text annotation
homologous
IL_5TBW_007
NA
IL_6QT0_0071/A/125:127,
1/A/141:143
Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_6QT0_0081/A/163:166,
1/A/256:258
No text annotation
IL_6QT0_1381/A/166:175,
1/A/243:256
No text annotation
IL_6QT0_0091/A/177:178,
1/A/238:241
No text annotation
IL_6QT0_0101/A/189:191,
1/A/204:205
Single bulged U
homologous
IL_5TBW_012
NA
IL_6QT0_0111/A/337:339,
1/y/25:26
Single bulged A
homologous
IL_5TBW_013
NA
IL_6QT0_0121/A/376:379,
1/A/390:403
No text annotation
homologous
IL_5TBW_014
NA
IL_6QT0_0131/A/404:410,
1/y/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6QT0_0141/A/429:431,
1/A/628:630
Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_6QT0_0161/A/512:513,
1/A/577:579
Single bulged A
homologous
IL_5TBW_018
NA
IL_6QT0_0171/A/517:525,
1/A/567:573
No text annotation
homologous
IL_5TBW_019
NA
IL_6QT0_1391/A/531:538,
1/A/553:561
No text annotation
homologous
IL_8P9A_248
IL_43858.1
IL_6QT0_0191/A/668:670,
1/A/792:794
Isolated non-canonical cWW pair
homologous
IL_5TBW_021
NA
IL_6QT0_0201/A/680:684,
1/A/696:700
No text annotation
homologous
IL_5TBW_022
NA
IL_6QT0_0211/A/725:728,
1/A/741:745
UAA/GAN variation
homologous
IL_5TBW_023
NA
IL_6QT0_0221/A/752:753,
1/A/779:781
Single bulged A
homologous
IL_5TBW_024
NA
IL_6QT0_1491/A/755:756,
1/A/775:777
No text annotation
homologous
IL_8CRE_027
IL_89505.4
IL_6QT0_0241/A/758:763,
1/A/768:773
No text annotation
geometric
IL_5TBW_026
NA
IL_6QT0_0251/A/803:805,
1/A/938:940
Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_6QT0_0261/A/805:809,
1/A/931:938
tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_6QT0_0271/A/833:834,
1/A/859:861
Single bulged G
geometric
IL_4V9F_026
IL_00225.14
IL_6QT0_0281/A/834:838,
1/A/855:859
Triple sheared
homologous
IL_8C3A_033
NA
IL_6QT0_0291/A/869:872,
1/A/888:890
Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_6QT0_0301/A/873:875,
1/A/886:887
Single bulged U
homologous
IL_8C3A_035
NA
IL_6QT0_0311/A/907:909,
1/A/919:923
Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_6QT0_0321/A/954:956,
1/A/965:967
Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_6QT0_0331/A/969:970,
1/A/1111:1113
Single stack bend
homologous
IL_5TBW_035
NA
IL_6QT0_0341/A/977:982,
1/A/1101:1104
Kink-turn related
homologous
IL_8C3A_039
NA
IL_6QT0_0351/A/983:985,
1/A/1099:1100
Single bulged G
homologous
IL_8C3A_040
NA
IL_6QT0_0361/A/991:997,
1/A/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_6QT0_1501/A/991:998,
1/A/1050:1058
No text annotation
IL_6QT0_0371/A/997:999,
1/A/1049:1052
Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_51387.3
IL_6QT0_0381/A/999:1004,
1/A/1046:1049
C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_6QT0_1421/A/1005:1009,
1/A/1041:1045
No text annotation
homologous
IL_8C3A_044
NA
IL_6QT0_0391/A/1006:1009,
1/A/1041:1044
Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_6QT0_0401/A/1009:1011,
1/A/1039:1041
Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_6QT0_1511/A/1014:1018,
1/A/1034:1036
No text annotation
homologous
IL_8P9A_271
IL_11415.1
IL_6QT0_0421/A/1069:1071,
1/A/1087:1089
Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_6QT0_0431/A/1074:1076,
1/A/1083:1084
Single bulged A
homologous
IL_5TBW_045
NA
IL_6QT0_0441/A/1120:1122,
1/A/1136:1138
Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6QT0_0451/A/1167:1171,
1/A/1328:1332
UAA/GAN
homologous
IL_5TBW_048
NA
IL_6QT0_0461/A/1173:1180,
1/A/1325:1326
SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_6QT0_0471/A/1180:1182,
1/A/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA
IL_6QT0_0481/A/1187:1194,
1/A/1314:1319
No text annotation
homologous
IL_5TBW_051
NA
IL_6QT0_0491/A/1194:1205,
1/A/1299:1314
No text annotation
geometric
IL_5TBW_052
NA
IL_6QT0_0501/A/1207:1209,
1/A/1296:1297
Single bulged U
homologous
IL_8C3A_056
NA
IL_6QT0_1431/A/1215:1226,
1/A/1283:1290
No text annotation
IL_6QT0_1521/A/1234:1238,
1/A/1250:1254
No text annotation
homologous
IL_8P9A_283
IL_16218.2
IL_6QT0_0521/A/1376:1378,
1/A/1428:1431
Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6QT0_0531/A/1385:1387,
1/A/1420:1421
Single bulged A
homologous
IL_8C3A_062
NA
IL_6QT0_0541/A/1388:1395,
1/A/1415:1419
Kink-turn
homologous
IL_5TBW_059
NA
IL_6QT0_0551/A/1398:1400,
1/A/1411:1412
Single bulged A
homologous
IL_5TBW_060
NA
IL_6QT0_0561/A/1444:1450,
1/A/2354:2359
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6QT0_0571/A/1501:1505,
1/A/1513:1515
C-loop
geometric
IL_7RQB_051
NA
IL_6QT0_0581/A/1532:1536,
1/A/1585:1590
UAA/GAN
homologous
IL_5TBW_063
NA
IL_6QT0_0591/A/1618:1621,
1/A/1824:1826
Other IL
homologous
IL_5TBW_064
NA
IL_6QT0_1531/A/1623:1624,
1/A/1819:1822
No text annotation
homologous
IL_8CRE_070
IL_82107.5
IL_6QT0_0611/A/1627:1631,
1/A/1811:1816
No text annotation
geometric
IL_5TBW_066
NA
IL_6QT0_0621/A/1645:1649,
1/A/1806:1810
Triple sheared
geometric
IL_5TBW_067
NA
IL_6QT0_0631/A/1661:1663,
1/A/1786:1788
Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_6QT0_0641/A/1669:1670,
1/A/1778:1780
Single bulged C
homologous
IL_5TBW_069
NA
IL_6QT0_0651/A/1670:1671,
1/A/1776:1778
Single stack bend
geometric
IL_5TBW_070
NA
IL_6QT0_0661/A/1694:1698,
1/A/1747:1752
No text annotation
homologous
IL_8C3A_077
NA
IL_6QT0_0671/A/1702:1707,
1/A/1737:1743
No text annotation
homologous
IL_5TBW_072
NA
IL_6QT0_0681/A/1711:1717,
1/A/1727:1733
Kink-turn
homologous
IL_5TBW_073
NA
IL_6QT0_1541/A/1883:1889,
1/A/2346:2349
No text annotation
homologous
IL_8P9A_302
IL_22829.2
IL_6QT0_0701/A/1895:1897,
1/A/2338:2340
No text annotation
homologous
IL_8C3A_081
NA
IL_6QT0_0711/A/1898:1901,
1/A/2336:2337
Major groove platform; stack outside cWW
homologous
IL_5TBW_076
NA
IL_6QT0_1441/A/1898:1906,
1/A/2333:2337
No text annotation
homologous
IL_8C3A_484
NA
IL_6QT0_0721/A/1901:1906,
1/A/2333:2336
Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_6QT0_0731/A/1918:1923,
1/A/1928:1934
No text annotation
homologous
IL_8C3A_084
NA
IL_6QT0_0741/A/1940:1942,
1/A/2106:2108
Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6QT0_0751/A/1947:1948,
1/A/2098:2101
No text annotation
homologous
IL_8C3A_086
NA
IL_6QT0_1451/A/2128:2129,
1/A/2323:2325
Single bulged A
homologous
IL_8C3A_087
NA
IL_6QT0_0771/A/2156:2161,
1/A/2173:2180
Kink-turn related
homologous
IL_5TBW_083
NA
IL_6QT0_0781/A/2196:2199,
1/A/2245:2246
Major groove intercalation
homologous
IL_5TBW_084
NA
IL_6QT0_0791/A/2200:2201,
1/A/2241:2244
Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6QT0_0801/A/2204:2206,
1/A/2237:2238
Single bulged U
homologous
IL_5TBW_086
NA
IL_6QT0_0811/A/2206:2210,
1/A/2235:2237
Major groove platform with extra pair
geometric
IL_5TBW_087
NA
IL_6QT0_0821/A/2211:2217,
1/A/2228:2234
No text annotation
homologous
IL_5TBW_088
NA
IL_6QT0_0831/A/2276:2277,
1/A/2307:2310
Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_6QT0_0841/A/2277:2288,
1/A/2304:2307
No text annotation
homologous
IL_5TBW_090
NA
IL_6QT0_0851/A/2391:2394,
1/A/2986:2988
Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_6QT0_0861/A/2396:2398,
1/A/2981:2984
Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_6QT0_0871/A/2409:2411,
1/A/2811:2812
Single bulged U
homologous
IL_8C3A_098
NA
IL_6QT0_0881/A/2412:2413,
1/A/2807:2810
Minor groove platform
homologous
IL_5TBW_094
NA
IL_6QT0_0891/A/2423:2425,
1/A/2604:2607
Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_6QT0_0901/A/2443:2451,
1/A/2496:2504
No text annotation
IL_6QT0_0911/A/2520:2526,
1/A/2584:2587
No text annotation
homologous
IL_5TBW_096
NA
IL_6QT0_0921/A/2529:2563,
1/A/2578:2581
No text annotation
IL_6QT0_0931/A/2614:2615,
1/A/2625:2627
Single bulged A
homologous
IL_5TBW_098
NA
IL_6QT0_0941/A/2666:2668,
1/A/2686:2690
Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_6QT0_0951/A/2714:2716,
1/A/2740:2741
Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_6QT0_0961/A/2718:2721,
1/A/2735:2738
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6QT0_0971/A/2770:2773,
1/A/2787:2788
Single stack bend
homologous
IL_5TBW_101
NA
IL_6QT0_0981/A/2823:2824,
1/A/2865:2867
Major groove platform
geometric
IL_5TBW_102
NA
IL_6QT0_1461/A/2823:2826,
1/A/2863:2867
No text annotation
homologous
IL_8C3A_111
NA
IL_6QT0_0991/A/2824:2826,
1/A/2863:2865
Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_6QT0_1001/A/2826:2828,
1/A/2862:2863
Major groove platform
geometric
IL_5TBW_104
NA
IL_6QT0_1011/A/2828:2830,
1/A/2858:2862
Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_6QT0_1021/A/2835:2839,
1/A/2849:2853
No text annotation
homologous
IL_8C3A_114
NA
IL_6QT0_1031/A/2876:2877,
1/A/2949:2951
Major groove platform
homologous
IL_5TBW_107
NA
IL_6QT0_1041/A/2879:2881,
1/A/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_6QT0_1051/A/2881:2882,
1/A/2940:2943
Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_6QT0_1061/A/2889:2891,
1/A/2912:2914
Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_6QT0_1471/A/2889:2892,
1/A/2909:2914
No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_6QT0_1071/A/2891:2892,
1/A/2909:2912
Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_6QT0_1081/A/2918:2920,
1/A/2926:2928
Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_6QT0_1091/A/2960:2961,
1/A/2970:2972
Single bulged A
homologous
IL_5TBW_113
NA
IL_6QT0_1101/A/3004:3007,
1/A/3139:3144
Double sheared
homologous
IL_8C3A_123
NA
IL_6QT0_1111/A/3012:3014,
1/A/3040:3042
Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6QT0_1121/A/3018:3025,
1/A/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6QT0_1131/A/3047:3051,
1/A/3091:3094
Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_6QT0_1141/A/3054:3059,
1/A/3084:3088
UAA/GAN related
homologous
IL_8C3A_127
NA
IL_6QT0_1151/A/3063:3064,
1/A/3077:3080
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6QT0_1161/A/3103:3107,
1/A/3127:3131
UAA/GAN
homologous
IL_8C3A_129
NA
IL_6QT0_1171/A/3164:3166,
1/A/3284:3286
Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_6QT0_1181/A/3177:3179,
1/A/3210:3211
Single bulged A
homologous
IL_5TBW_123
NA
IL_6QT0_1191/A/3179:3188,
1/A/3204:3210
No text annotation
geometric
IL_5TBW_124
NA
IL_6QT0_1481/A/3193:3194,
1/A/3197:3199
Single bulged U
geometric
IL_5TBW_125
NA
IL_6QT0_1211/A/3300:3303,
1/A/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_6QT0_1221/A/3318:3320,
1/A/3387:3388
Single bulged U
geometric
IL_3D2V_001
IL_89505.4
IL_6QT0_1231/A/3324:3325,
1/A/3381:3383
Single bulged U
homologous
IL_8C3A_137
NA
IL_6QT0_1241/A/3328:3330,
1/A/3373:3378
No text annotation
homologous
IL_8C3A_138
NA
IL_6QT0_1251/A/3332:3337,
1/A/3367:3371
No text annotation
homologous
IL_8C3A_139
NA
IL_6QT0_1261/A/3340:3342,
1/A/3363:3364
Single bulged U
geometric
IL_3WBM_001
IL_89505.4
IL_6QT0_1271/A/3342:3345,
1/A/3360:3363
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_6QT0_1281/A/3349:3350,
1/A/3353:3356
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6QT0_1291/x/15:16,
1/x/63:65
Single bulged A
homologous
IL_5TBW_372
NA
IL_6QT0_1301/x/21:27,
1/x/53:58
Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6QT0_1311/x/28:29,
1/x/49:52
Minor groove platform
homologous
IL_5TBW_374
NA
IL_6QT0_1321/x/29:30,
1/x/47:49
Single stack bend
geometric
IL_5TBW_375
NA
IL_6QT0_1331/x/32:36,
1/x/41:45
Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_6QT0_1341/x/72:80,
1/x/100:106
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6QT0_1351/x/84:87,
1/x/94:96
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6QT0_1551/y/64:66,
1/y/93:96
Isolated non-canonical cWW with bulges
homologous
IL_8P9A_371
IL_07785.1
IL_6QT0_1371/y/68:69,
1/y/89:91
Single bulged U
homologous
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_6QT0_015No text annotation
IL_6QT0_018No text annotation
IL_6QT0_023No text annotation
IL_6QT0_140No text annotation
IL_6QT0_141No text annotation
IL_6QT0_041No text annotation
IL_6QT0_051No text annotation
IL_6QT0_060No text annotation
IL_6QT0_069No text annotation
IL_6QT0_076Isolated non-canonical cWW pair
IL_6QT0_120Isolated non-canonical cWW pair
IL_6QT0_136Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6QT0_0011/A/113:123,
1/A/149:158,
1/A/263:267
No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_6QT0_0171/A/113:124,
1/A/144:158,
1/A/263:267
No text annotation
J3_6QT0_0181/A/340:356,
1/A/363:368,
1/y/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_6QT0_0021/A/369:376,
1/A/403:404,
1/y/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_6QT0_0191/A/369:379,
1/A/390:404,
1/y/19:20
No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_6QT0_0031/A/502:503,
1/A/588:597,
1/A/606:611
No text annotation
homologous
J3_5TBW_003
NA
J3_6QT0_0291/A/814:820,
1/A/905:907,
1/A/923:926
No text annotation
homologous
J3_8CRE_009
J3_64189.2
J3_6QT0_0051/A/828:831,
1/A/863:867,
1/A/892:897
No text annotation
homologous
J3_5TBW_005
NA
J3_6QT0_0211/A/986:987,
1/A/1062:1066,
1/A/1092:1098
No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_6QT0_0061/A/1230:1232,
1/A/1256:1266,
1/A/1275:1279
No text annotation
J3_6QT0_0071/A/1479:1485,
1/A/1857:1859,
1/A/1871:1874
No text annotation
homologous
J3_8C3A_006
NA
J3_6QT0_0081/A/1488:1491,
1/A/1837:1843,
1/A/1852:1854
No text annotation
homologous
J3_8C3A_007
NA
J3_6QT0_0091/A/1526:1531,
1/A/1591:1595,
1/A/1612:1613
No text annotation
homologous
J3_5TBW_010
NA
J3_6QT0_0231/A/1537:1542,
1/A/1551:1562,
1/A/1577:1584
No text annotation
J3_6QT0_0301/A/1631:1632,
1/A/1641:1645,
1/A/1810:1811
No text annotation
homologous
J3_8CRE_017
J3_75962.2
J3_6QT0_0241/A/1654:1658,
1/A/1791:1792,
1/A/1796:1801
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6QT0_0251/A/2432:2435,
1/A/2512:2516,
1/A/2591:2597
No text annotation
geometric
J3_4V9F_007
J3_97609.1
J3_6QT0_0261/A/2651:2653,
1/A/2754:2765,
1/A/2793:2798
No text annotation
homologous
J3_8P9A_061
J3_20992.1
J3_6QT0_0121/A/2664:2666,
1/A/2690:2692,
1/A/2701:2706
No text annotation
homologous
J3_5TBW_013
NA
J3_6QT0_0131/A/2886:2889,
1/A/2914:2916,
1/A/2930:2936
No text annotation
homologous
J3_8C3A_011
NA
J3_6QT0_0271/A/3167:3176,
1/A/3212:3220,
1/A/3265:3283
No text annotation
J3_6QT0_0141/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390
No text annotation
homologous
J3_5TBW_015
NA
J3_6QT0_0151/x/9:14,
1/x/66:67,
1/x/111:112
No text annotation
homologous
J3_5TBW_045
NA
J3_6QT0_0281/y/44:45,
1/y/58:64,
1/y/96:100
No text annotation
homologous
J3_8P9A_067
J3_35667.2
J4_6QT0_0011/A/112:113,
1/A/267:272,
1/A/293:299,
1/A/316:319
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6QT0_0021/A/185:189,
1/A/205:208,
1/A/212:214,
1/A/226:231
No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_6QT0_0031/A/1451:1457,
1/A/1475:1476,
1/A/1877:1880,
1/A/2352:2353
No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_6QT0_0041/A/1492:1496,
1/A/1520:1525,
1/A/1614:1615,
1/A/1829:1836
No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_6QT0_0051/A/1674:1675,
1/A/1693:1694,
1/A/1752:1753,
1/A/1772:1773
No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_6QT0_0061/A/2130:2134,
1/A/2146:2150,
1/A/2186:2190,
1/A/2317:2322
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6QT0_0111/A/2192:2194,
1/A/2248:2249,
1/A/2267:2276,
1/A/2310:2315
No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_6QT0_0081/A/2654:2658,
1/A/2712:2714,
1/A/2741:2742,
1/A/2751:2753
No text annotation
J4_6QT0_0091/A/2654:2658,
1/A/2712:2716,
1/A/2740:2742,
1/A/2751:2753
No text annotation
homologous
J4_8C3A_008
NA
J4_6QT0_0101/A/3010:3012,
1/A/3042:3043,
1/A/3098:3100,
1/A/3134:3136
No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_6QT0_0011/A/20:22,
1/y/35:42,
1/y/102:107,
1/y/115:116,
1/y/137:139
No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_6QT0_0021/A/658:663,
1/A/799:802,
1/A/941:944,
1/A/1375:1376,
1/A/1431:1437
No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_6QT0_0031/A/675:678,
1/A/702:706,
1/A/713:721,
1/A/749:751,
1/A/782:787
No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_6QT0_0041/A/1906:1914,
1/A/1938:1939,
1/A/2109:2110,
1/A/2114:2122,
1/A/2331:2333
No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_6QT0_0051/A/2399:2406,
1/A/2815:2823,
1/A/2867:2876,
1/A/2951:2957,
1/A/2975:2980
No text annotation
J5_6QT0_0061/A/2416:2419,
1/A/2611:2614,
1/A/2627:2628,
1/A/2650:2651,
1/A/2798:2804
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_6QT0_0011/A/22:27,
1/A/58:68,
1/A/75:79,
1/A/106:110,
1/A/321:331,
1/y/32:35
No text annotation
J6_6QT0_0021/A/2416:2419,
1/A/2611:2614,
1/A/2627:2628,
1/A/2650:2653,
1/A/2754:2765,
1/A/2793:2804
No text annotation
J7_6QT0_0011/A/949:954,
1/A/967:968,
1/A/1114:1117,
1/A/1141:1146,
1/A/1157:1161,
1/A/1338:1339,
1/A/1365:1370
No text annotation

Problematic loops

#loop idProblemSequence
J3_6QT0_004No text annotation
J3_6QT0_020No text annotation
J3_6QT0_022No text annotation
J3_6QT0_010No text annotation
J3_6QT0_011No text annotation
J3_6QT0_016No text annotation
J4_6QT0_007No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.0718 s