HL_6QT0_012

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

6QT0|1|A|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_012 not in the Motif Atlas

Homologous match to HL_8CRE_012

Geometric discrepancy: 0.5899

The information below is about HL_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6QT0|1|A|U|541
6QT0|1|A|G|542
6QT0|1|A|C|543
6QT0|1|A|C|544
6QT0|1|A|U|545
6QT0|1|A|C|546
6QT0|1|A|G|547
6QT0|1|A|G|548
6QT0|1|A|U|549
6QT0|1|A|A|550

Current chains

Chain A

25S rRNA

Nearby chains

Chain S

60S ribosomal protein L20-A