HL_6QT0_029

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

6QT0|1|A|U|1351, 6QT0|1|A|U|1353, 6QT0|1|A|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QT0|1|A|U|1347
6QT0|1|A|U|1348
6QT0|1|A|G|1349
6QT0|1|A|A|1350
6QT0|1|A|U|1351
6QT0|1|A|A|1352
6QT0|1|A|U|1353
6QT0|1|A|G|1354
6QT0|1|A|A|1355
6QT0|1|A|U|1356
6QT0|1|A|G|1357

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain G

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L18-A

Chain e

60S ribosomal protein L32