HL_6QT0_037

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6QT0|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1275

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6QT0|1|A|G|1680
6QT0|1|A|U|1681
6QT0|1|A|U|1682
6QT0|1|A|A|1683
6QT0|1|A|U|1684
6QT0|1|A|C|1685
6QT0|1|A|U|1686
6QT0|1|A|U|1687
6QT0|1|A|U|1688

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain V

60S ribosomal protein L22-A