HL_6QT0_052

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACC

Length

46 nucleotides

Bulged bases

6QT0|1|A|U|2453, 6QT0|1|A|G|2454, 6QT0|1|A|U|2455, 6QT0|1|A|U|2460, 6QT0|1|A|C|2490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QT0|1|A|G|2451
6QT0|1|A|G|2452
6QT0|1|A|U|2453
6QT0|1|A|G|2454
6QT0|1|A|U|2455
6QT0|1|A|A|2456
6QT0|1|A|G|2457
6QT0|1|A|A|2458
6QT0|1|A|A|2459
6QT0|1|A|U|2460
6QT0|1|A|A|2461
6QT0|1|A|A|2462
6QT0|1|A|G|2463
6QT0|1|A|U|2464
6QT0|1|A|G|2465
6QT0|1|A|G|2466
6QT0|1|A|G|2467
6QT0|1|A|A|2468
6QT0|1|A|G|2469
6QT0|1|A|C|2470
6QT0|1|A|U|2471
6QT0|1|A|U|2472
6QT0|1|A|C|2473
6QT0|1|A|G|2474
6QT0|1|A|G|2475
6QT0|1|A|C|2476
6QT0|1|A|G|2477
6QT0|1|A|C|2478
6QT0|1|A|C|2479
6QT0|1|A|A|2480
6QT0|1|A|G|2481
6QT0|1|A|U|2482
6QT0|1|A|G|2483
6QT0|1|A|A|2484
6QT0|1|A|A|2485
6QT0|1|A|A|2486
6QT0|1|A|U|2487
6QT0|1|A|A|2488
6QT0|1|A|C|2489
6QT0|1|A|C|2490
6QT0|1|A|A|2491
6QT0|1|A|C|2492
6QT0|1|A|U|2493
6QT0|1|A|A|2494
6QT0|1|A|C|2495
6QT0|1|A|C|2496

Current chains

Chain A

25S rRNA

Nearby chains