HL_6QT0_067

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6QT0|1|A|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1065

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6QT0|1|A|C|3110
6QT0|1|A|U|3111
6QT0|1|A|G|3112
6QT0|1|A|A|3113
6QT0|1|A|A|3114
6QT0|1|A|C|3115
6QT0|1|A|G|3116
6QT0|1|A|C|3117
6QT0|1|A|C|3118
6QT0|1|A|U|3119
6QT0|1|A|C|3120
6QT0|1|A|U|3121
6QT0|1|A|A|3122
6QT0|1|A|A|3123
6QT0|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B

Chain t

Ubiquitin-60S ribosomal protein L40