HL_6QT0_086

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6QT0|1|A|A|2372, 6QT0|1|A|A|2373, 6QT0|1|A|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QT0_086 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.1095

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6QT0|1|A|G|2369
6QT0|1|A|G|2370
6QT0|1|A|G|2371
6QT0|1|A|A|2372
6QT0|1|A|A|2373
6QT0|1|A|C|2374
6QT0|1|A|G|2375
6QT0|1|A|G|2376
6QT0|1|A|G|2377
6QT0|1|A|C|2378

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain e

60S ribosomal protein L32