HL_6QTZ_058
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUCAGUGUGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QTZ_058 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2413
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6QTZ|1|A|U|2723
6QTZ|1|A|U|2724
6QTZ|1|A|U|2725
6QTZ|1|A|C|2726
6QTZ|1|A|A|2727
6QTZ|1|A|G|2728
6QTZ|1|A|U|2729
6QTZ|1|A|G|2730
6QTZ|1|A|U|2731
6QTZ|1|A|G|2732
6QTZ|1|A|A|2733
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L29
- Chain l
- 60S ribosomal protein L42-A
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