6QTZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6QTZ_001 | 1/A/38:45 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_6QTZ_002 | 1/A/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6QTZ_003 | 1/A/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6QTZ_004 | 1/A/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_6QTZ_005 | 1/A/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_6QTZ_006 | 1/A/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6QTZ_007 | 1/A/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6QTZ_008 | 1/A/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6QTZ_009 | 1/A/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6QTZ_010 | 1/A/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6QTZ_011 | 1/A/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6QTZ_012 | 1/A/539:552 | No text annotation | ||
| HL_6QTZ_013 | 1/A/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6QTZ_014 | 1/A/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6QTZ_015 | 1/A/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6QTZ_016 | 1/A/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6QTZ_017 | 1/A/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6QTZ_018 | 1/A/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6QTZ_019 | 1/A/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6QTZ_020 | 1/A/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6QTZ_021 | 1/A/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6QTZ_022 | 1/A/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6QTZ_023 | 1/A/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_6QTZ_024 | 1/A/1076:1083 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6QTZ_025 | 1/A/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6QTZ_026 | 1/A/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_6QTZ_027 | 1/A/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_6QTZ_028 | 1/A/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_6QTZ_078 | 1/A/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_6QTZ_030 | 1/A/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6QTZ_031 | 1/A/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6QTZ_032 | 1/A/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6QTZ_033 | 1/A/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6QTZ_034 | 1/A/1565:1574 | No text annotation | ||
| HL_6QTZ_035 | 1/A/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6QTZ_036 | 1/A/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6QTZ_037 | 1/A/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6QTZ_038 | 1/A/1719:1725 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6QTZ_039 | 1/A/1760:1765 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6QTZ_040 | 1/A/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6QTZ_041 | 1/A/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6QTZ_042 | 1/A/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6QTZ_043 | 1/A/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6QTZ_045 | 1/A/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6QTZ_046 | 1/A/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6QTZ_047 | 1/A/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6QTZ_048 | 1/A/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6QTZ_049 | 1/A/2254:2262 | No text annotation | ||
| HL_6QTZ_050 | 1/A/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6QTZ_051 | 1/A/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6QTZ_052 | 1/A/2470:2475 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6QTZ_053 | 1/A/2567:2575 | No text annotation | ||
| HL_6QTZ_054 | 1/A/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6QTZ_055 | 1/A/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6QTZ_056 | 1/A/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6QTZ_057 | 1/A/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6QTZ_079 | 1/A/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6QTZ_059 | 1/A/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6QTZ_060 | 1/A/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6QTZ_061 | 1/A/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_6QTZ_062 | 1/A/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_6QTZ_063 | 1/A/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6QTZ_064 | 1/A/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6QTZ_065 | 1/A/3025:3030 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_6QTZ_066 | 1/A/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6QTZ_067 | 1/A/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6QTZ_068 | 1/A/3193:3199 | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
| HL_6QTZ_070 | 1/A/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_6QTZ_080 | 1/A/3349:3356 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_6QTZ_071 | 1/A/3350:3353 | No text annotation | ||
| HL_6QTZ_081 | 1/x/32:45 | No text annotation | homologous HL_8P9A_183 HL_13971.1 | |
| HL_6QTZ_072 | 1/x/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6QTZ_073 | 1/x/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6QTZ_074 | 1/y/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_6QTZ_075 | 1/y/69:89 | No text annotation | geometric HL_3HJW_001 HL_18423.1 | |
| HL_6QTZ_076 | 1/y/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6QTZ_077 | 1/y/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6QTZ_029 | No text annotation | ||
| HL_6QTZ_044 | No text annotation | ||
| HL_6QTZ_058 | No text annotation | ||
| HL_6QTZ_069 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6QTZ_001 | 1/A/7:8, 1/y/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6QTZ_144 | 1/A/13:15, 1/y/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6QTZ_003 | 1/A/27:28, 1/A/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6QTZ_004 | 1/A/31:38, 1/A/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_6QTZ_005 | 1/A/82:89, 1/A/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6QTZ_006 | 1/A/123:124, 1/A/144:149 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_6QTZ_007 | 1/A/125:127, 1/A/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6QTZ_145 | 1/A/163:165, 1/A/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
| IL_6QTZ_009 | 1/A/169:172, 1/A/247:253 | No text annotation | ||
| IL_6QTZ_010 | 1/A/172:173, 1/A/245:247 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_6QTZ_011 | 1/A/177:178, 1/A/238:241 | Minor groove platform | geometric IL_4KQY_004 IL_02555.1 | |
| IL_6QTZ_012 | 1/A/189:191, 1/A/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6QTZ_013 | 1/A/337:339, 1/y/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6QTZ_014 | 1/A/376:379, 1/A/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6QTZ_015 | 1/A/404:410, 1/y/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6QTZ_016 | 1/A/429:431, 1/A/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6QTZ_018 | 1/A/512:513, 1/A/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6QTZ_019 | 1/A/517:525, 1/A/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6QTZ_020 | 1/A/531:538, 1/A/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6QTZ_021 | 1/A/668:670, 1/A/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_6QTZ_022 | 1/A/680:684, 1/A/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6QTZ_023 | 1/A/725:728, 1/A/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_6QTZ_024 | 1/A/752:753, 1/A/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6QTZ_025 | 1/A/755:756, 1/A/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_6QTZ_026 | 1/A/758:763, 1/A/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_6QTZ_027 | 1/A/803:805, 1/A/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6QTZ_028 | 1/A/805:809, 1/A/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6QTZ_029 | 1/A/833:834, 1/A/859:861 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
| IL_6QTZ_030 | 1/A/834:838, 1/A/855:859 | Triple sheared | homologous IL_5TBW_030 NA | |
| IL_6QTZ_031 | 1/A/869:872, 1/A/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6QTZ_032 | 1/A/873:875, 1/A/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6QTZ_033 | 1/A/907:909, 1/A/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6QTZ_034 | 1/A/954:956, 1/A/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6QTZ_035 | 1/A/969:970, 1/A/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6QTZ_036 | 1/A/977:981, 1/A/1102:1104 | No text annotation | ||
| IL_6QTZ_037 | 1/A/983:985, 1/A/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6QTZ_038 | 1/A/991:998, 1/A/1050:1058 | No text annotation | ||
| IL_6QTZ_039 | 1/A/999:1004, 1/A/1046:1049 | C-loop with bulged stacked A's | homologous IL_5TBW_040 NA | |
| IL_6QTZ_040 | 1/A/1006:1009, 1/A/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6QTZ_041 | 1/A/1009:1011, 1/A/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6QTZ_158 | 1/A/1014:1018, 1/A/1034:1036 | No text annotation | homologous IL_8P9A_271 IL_11415.1 | |
| IL_6QTZ_043 | 1/A/1069:1071, 1/A/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6QTZ_044 | 1/A/1074:1076, 1/A/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_6QTZ_045 | 1/A/1120:1122, 1/A/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6QTZ_047 | 1/A/1167:1171, 1/A/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6QTZ_048 | 1/A/1173:1180, 1/A/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6QTZ_049 | 1/A/1180:1182, 1/A/1324:1325 | Single bulged U | geometric IL_7A0S_035 IL_89505.4 | |
| IL_6QTZ_050 | 1/A/1187:1194, 1/A/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6QTZ_051 | 1/A/1194:1205, 1/A/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6QTZ_052 | 1/A/1207:1209, 1/A/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6QTZ_150 | 1/A/1215:1226, 1/A/1283:1290 | No text annotation | ||
| IL_6QTZ_053 | 1/A/1234:1238, 1/A/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
| IL_6QTZ_054 | 1/A/1262:1266, 1/A/1275:1277 | Major groove platform with extra cWW | homologous IL_5TBW_056 NA | |
| IL_6QTZ_055 | 1/A/1376:1378, 1/A/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6QTZ_056 | 1/A/1385:1387, 1/A/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6QTZ_057 | 1/A/1388:1395, 1/A/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6QTZ_058 | 1/A/1398:1400, 1/A/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6QTZ_059 | 1/A/1444:1450, 1/A/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6QTZ_151 | 1/A/1501:1505, 1/A/1513:1515 | C-loop | homologous IL_8C3A_482 NA | |
| IL_6QTZ_061 | 1/A/1532:1536, 1/A/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6QTZ_062 | 1/A/1563:1565, 1/A/1574:1577 | No text annotation | ||
| IL_6QTZ_063 | 1/A/1618:1621, 1/A/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6QTZ_064 | 1/A/1623:1624, 1/A/1819:1822 | Major groove intercalation | geometric IL_4WF9_071 IL_82107.4 | |
| IL_6QTZ_065 | 1/A/1627:1631, 1/A/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_6QTZ_066 | 1/A/1645:1649, 1/A/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6QTZ_067 | 1/A/1661:1663, 1/A/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6QTZ_068 | 1/A/1669:1670, 1/A/1778:1780 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_6QTZ_069 | 1/A/1670:1671, 1/A/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6QTZ_070 | 1/A/1694:1698, 1/A/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6QTZ_071 | 1/A/1702:1707, 1/A/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_6QTZ_072 | 1/A/1711:1717, 1/A/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6QTZ_159 | 1/A/1883:1889, 1/A/2346:2349 | No text annotation | homologous IL_8P9A_302 IL_22829.2 | |
| IL_6QTZ_074 | 1/A/1895:1897, 1/A/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6QTZ_075 | 1/A/1898:1901, 1/A/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6QTZ_152 | 1/A/1898:1906, 1/A/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6QTZ_076 | 1/A/1901:1906, 1/A/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6QTZ_077 | 1/A/1918:1923, 1/A/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_6QTZ_078 | 1/A/1940:1942, 1/A/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6QTZ_079 | 1/A/1947:1948, 1/A/2098:2101 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_6QTZ_080 | 1/A/2128:2129, 1/A/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6QTZ_081 | 1/A/2156:2161, 1/A/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_6QTZ_082 | 1/A/2196:2199, 1/A/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6QTZ_083 | 1/A/2200:2201, 1/A/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6QTZ_084 | 1/A/2204:2206, 1/A/2237:2238 | Single bulged U | homologous IL_5TBW_086 NA | |
| IL_6QTZ_085 | 1/A/2206:2210, 1/A/2235:2237 | Major groove platform with extra pair | homologous IL_5TBW_087 NA | |
| IL_6QTZ_086 | 1/A/2211:2217, 1/A/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6QTZ_087 | 1/A/2276:2277, 1/A/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6QTZ_088 | 1/A/2277:2288, 1/A/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6QTZ_089 | 1/A/2391:2394, 1/A/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6QTZ_090 | 1/A/2396:2398, 1/A/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6QTZ_091 | 1/A/2409:2411, 1/A/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6QTZ_092 | 1/A/2412:2413, 1/A/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6QTZ_093 | 1/A/2423:2425, 1/A/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6QTZ_094 | 1/A/2444:2447, 1/A/2499:2503 | No text annotation | ||
| IL_6QTZ_154 | 1/A/2447:2469, 1/A/2476:2499 | No text annotation | ||
| IL_6QTZ_095 | 1/A/2520:2526, 1/A/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6QTZ_097 | 1/A/2565:2567, 1/A/2575:2576 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6QTZ_098 | 1/A/2614:2615, 1/A/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6QTZ_099 | 1/A/2666:2668, 1/A/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6QTZ_100 | 1/A/2714:2716, 1/A/2740:2741 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_6QTZ_101 | 1/A/2718:2721, 1/A/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6QTZ_102 | 1/A/2770:2773, 1/A/2787:2788 | Single stack bend with bulge | homologous IL_5TBW_101 NA | |
| IL_6QTZ_103 | 1/A/2823:2824, 1/A/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_6QTZ_155 | 1/A/2823:2826, 1/A/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6QTZ_104 | 1/A/2824:2826, 1/A/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6QTZ_105 | 1/A/2826:2828, 1/A/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6QTZ_106 | 1/A/2828:2830, 1/A/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_6QTZ_107 | 1/A/2835:2839, 1/A/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6QTZ_108 | 1/A/2876:2877, 1/A/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6QTZ_109 | 1/A/2879:2881, 1/A/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6QTZ_110 | 1/A/2881:2882, 1/A/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6QTZ_111 | 1/A/2889:2891, 1/A/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6QTZ_156 | 1/A/2889:2892, 1/A/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_6QTZ_112 | 1/A/2891:2892, 1/A/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_6QTZ_113 | 1/A/2918:2920, 1/A/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6QTZ_114 | 1/A/2960:2961, 1/A/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6QTZ_115 | 1/A/3004:3007, 1/A/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_6QTZ_116 | 1/A/3012:3014, 1/A/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6QTZ_117 | 1/A/3018:3025, 1/A/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6QTZ_118 | 1/A/3047:3051, 1/A/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6QTZ_119 | 1/A/3054:3059, 1/A/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6QTZ_157 | 1/A/3063:3064, 1/A/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6QTZ_121 | 1/A/3103:3107, 1/A/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_6QTZ_122 | 1/A/3160:3162, 1/A/3289:3290 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6QTZ_123 | 1/A/3162:3166, 1/A/3284:3289 | No text annotation | homologous IL_8P9A_349 IL_49751.4 | |
| IL_6QTZ_124 | 1/A/3168:3170, 1/A/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_6QTZ_125 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_6QTZ_126 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_6QTZ_127 | 1/A/3300:3303, 1/A/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_5TBW_129 NA | |
| IL_6QTZ_128 | 1/A/3318:3320, 1/A/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_6QTZ_129 | 1/A/3324:3325, 1/A/3381:3383 | Major groove intercalation | geometric IL_1ET4_002 IL_89505.4 | |
| IL_6QTZ_130 | 1/A/3328:3330, 1/A/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6QTZ_131 | 1/A/3332:3337, 1/A/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6QTZ_132 | 1/A/3340:3342, 1/A/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6QTZ_133 | 1/A/3342:3345, 1/A/3360:3363 | Double sheared | geometric IL_6CZR_169 NA | |
| IL_6QTZ_134 | 1/A/3349:3350, 1/A/3353:3356 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_6QTZ_135 | 1/x/15:16, 1/x/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6QTZ_136 | 1/x/21:27, 1/x/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6QTZ_137 | 1/x/28:29, 1/x/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_6QTZ_138 | 1/x/29:30, 1/x/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_6QTZ_139 | 1/x/32:36, 1/x/41:45 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.11 | |
| IL_6QTZ_140 | 1/x/71:80, 1/x/100:107 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | geometric IL_3DIL_003 IL_34470.3 | |
| IL_6QTZ_141 | 1/x/84:87, 1/x/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6QTZ_142 | 1/y/64:66, 1/y/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6QTZ_143 | 1/y/68:69, 1/y/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6QTZ_002 | Isolated cWH basepair | ||
| IL_6QTZ_008 | No text annotation | ||
| IL_6QTZ_017 | No text annotation | ||
| IL_6QTZ_146 | No text annotation | ||
| IL_6QTZ_147 | No text annotation | ||
| IL_6QTZ_148 | No text annotation | ||
| IL_6QTZ_042 | No text annotation | ||
| IL_6QTZ_149 | No text annotation | ||
| IL_6QTZ_046 | No text annotation | ||
| IL_6QTZ_060 | No text annotation | ||
| IL_6QTZ_073 | No text annotation | ||
| IL_6QTZ_153 | No text annotation | ||
| IL_6QTZ_096 | No text annotation | ||
| IL_6QTZ_120 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6QTZ_001 | 1/A/113:123, 1/A/149:158, 1/A/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_6QTZ_018 | 1/A/113:124, 1/A/144:158, 1/A/263:267 | No text annotation | ||
| J3_6QTZ_019 | 1/A/340:356, 1/A/363:368, 1/y/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6QTZ_002 | 1/A/369:376, 1/A/403:404, 1/y/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6QTZ_020 | 1/A/369:379, 1/A/390:404, 1/y/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6QTZ_003 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6QTZ_004 | 1/A/814:820, 1/A/905:907, 1/A/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6QTZ_005 | 1/A/828:831, 1/A/863:867, 1/A/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6QTZ_006 | 1/A/986:987, 1/A/1062:1066, 1/A/1092:1098 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_6QTZ_007 | 1/A/1230:1232, 1/A/1256:1262, 1/A/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_6QTZ_008 | 1/A/1479:1485, 1/A/1857:1859, 1/A/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6QTZ_009 | 1/A/1488:1491, 1/A/1837:1843, 1/A/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6QTZ_010 | 1/A/1526:1531, 1/A/1591:1595, 1/A/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6QTZ_022 | 1/A/1537:1542, 1/A/1551:1563, 1/A/1577:1584 | No text annotation | homologous J3_8P9A_056 J3_38098.1 | |
| J3_6QTZ_011 | 1/A/1631:1632, 1/A/1641:1645, 1/A/1810:1811 | No text annotation | geometric J3_8C3A_054 NA | |
| J3_6QTZ_024 | 1/A/1654:1658, 1/A/1791:1792, 1/A/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6QTZ_025 | 1/A/2432:2435, 1/A/2512:2516, 1/A/2591:2597 | No text annotation | geometric J3_4V9F_007 J3_97609.1 | |
| J3_6QTZ_026 | 1/A/2651:2653, 1/A/2754:2765, 1/A/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6QTZ_013 | 1/A/2664:2666, 1/A/2690:2692, 1/A/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6QTZ_014 | 1/A/2886:2889, 1/A/2914:2916, 1/A/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6QTZ_027 | 1/A/3171:3176, 1/A/3212:3220, 1/A/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_6QTZ_015 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6QTZ_016 | 1/x/9:14, 1/x/66:67, 1/x/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6QTZ_017 | 1/y/44:45, 1/y/58:64, 1/y/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_6QTZ_010 | 1/A/112:113, 1/A/267:272, 1/A/293:299, 1/A/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6QTZ_011 | 1/A/185:189, 1/A/205:208, 1/A/212:214, 1/A/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_6QTZ_003 | 1/A/1451:1457, 1/A/1475:1476, 1/A/1877:1880, 1/A/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_6QTZ_004 | 1/A/1492:1496, 1/A/1520:1525, 1/A/1614:1615, 1/A/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_6QTZ_005 | 1/A/1674:1675, 1/A/1693:1694, 1/A/1752:1753, 1/A/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_6QTZ_012 | 1/A/2130:2134, 1/A/2146:2150, 1/A/2186:2190, 1/A/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6QTZ_007 | 1/A/2192:2194, 1/A/2248:2249, 1/A/2267:2276, 1/A/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_6QTZ_008 | 1/A/2654:2658, 1/A/2712:2714, 1/A/2741:2742, 1/A/2751:2753 | No text annotation | ||
| J4_6QTZ_009 | 1/A/3010:3012, 1/A/3042:3043, 1/A/3098:3100, 1/A/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J5_6QTZ_001 | 1/A/20:22, 1/y/35:42, 1/y/102:107, 1/y/115:116, 1/y/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6QTZ_002 | 1/A/658:663, 1/A/799:802, 1/A/941:944, 1/A/1375:1376, 1/A/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6QTZ_003 | 1/A/675:678, 1/A/702:707, 1/A/712:721, 1/A/749:751, 1/A/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_6QTZ_004 | 1/A/1906:1914, 1/A/1938:1939, 1/A/2109:2110, 1/A/2114:2122, 1/A/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6QTZ_005 | 1/A/2399:2406, 1/A/2815:2823, 1/A/2867:2876, 1/A/2951:2957, 1/A/2975:2980 | No text annotation | ||
| J5_6QTZ_006 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2651, 1/A/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_6QTZ_001 | 1/A/22:27, 1/A/58:68, 1/A/75:79, 1/A/106:110, 1/A/321:331, 1/y/32:35 | No text annotation | ||
| J6_6QTZ_002 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2653, 1/A/2754:2765, 1/A/2793:2804 | No text annotation | ||
| J7_6QTZ_001 | 1/A/949:954, 1/A/967:968, 1/A/1114:1117, 1/A/1141:1146, 1/A/1157:1161, 1/A/1338:1339, 1/A/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6QTZ_021 | No text annotation | ||
| J3_6QTZ_023 | No text annotation | ||
| J3_6QTZ_012 | No text annotation | ||
| J4_6QTZ_001 | No text annotation | ||
| J4_6QTZ_002 | No text annotation | ||
| J4_6QTZ_006 | No text annotation |
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