HL_6QTZ_068

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

6QTZ|1|A|U|3195, 6QTZ|1|A|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QTZ_068 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.275

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6QTZ|1|A|C|3193
6QTZ|1|A|C|3194
6QTZ|1|A|U|3195
6QTZ|1|A|U|3196
6QTZ|1|A|G|3197
6QTZ|1|A|U|3198
6QTZ|1|A|G|3199

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B

Chain M

60S ribosomal protein L14-A