HL_6QTZ_069

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUAC

Length

5 nucleotides

Bulged bases

6QTZ|1|A|A|3223

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QTZ_069 not in the Motif Atlas

Geometric match to HL_7EQJ_004

Geometric discrepancy: 0.2254

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6QTZ|1|A|G|3220
6QTZ|1|A|C|3221
6QTZ|1|A|U|3222
6QTZ|1|A|A|3223
6QTZ|1|A|C|3265

Current chains

Chain A

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L6-A