HL_6QUL_013

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6QUL|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0844

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6QUL|1|A|G|410
6QUL|1|A|G|411
6QUL|1|A|A|412
6QUL|1|A|C|413
6QUL|1|A|C|414
6QUL|1|A|A|415
6QUL|1|A|U|416
6QUL|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15