HL_6QUL_021

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

6QUL|1|A|U|747, 6QUL|1|A|A|751, 6QUL|1|A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_021 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1099

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|U|744
6QUL|1|A|G|745
6QUL|1|A|U|746
6QUL|1|A|U|747
6QUL|1|A|G|748
6QUL|1|A|A|749
6QUL|1|A|A|750
6QUL|1|A|A|751
6QUL|1|A|A|752
6QUL|1|A|A|753

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32

Chain d

50S ribosomal protein L34