HL_6QUL_045

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6QUL|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_045 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1916

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6QUL|1|A|G|1910
6QUL|1|A|U|1911
6QUL|1|A|A|1912
6QUL|1|A|A|1913
6QUL|1|A|C|1914
6QUL|1|A|U|1915
6QUL|1|A|A|1916
6QUL|1|A|U|1917
6QUL|1|A|A|1918
6QUL|1|A|A|1919
6QUL|1|A|C|1920

Current chains

Chain A

23S rRNA

Nearby chains