HL_6QUL_050

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6QUL|1|A|A|2268, 6QUL|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_050 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0861

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6QUL|1|A|C|2264
6QUL|1|A|U|2265
6QUL|1|A|A|2266
6QUL|1|A|A|2267
6QUL|1|A|A|2268
6QUL|1|A|G|2269
6QUL|1|A|A|2270
6QUL|1|A|G|2271
6QUL|1|A|U|2272
6QUL|1|A|A|2273
6QUL|1|A|A|2274
6QUL|1|A|C|2275
6QUL|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27