HL_6QUL_062

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6QUL|1|A|G|2751, 6QUL|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_062 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0809

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|C|2745
6QUL|1|A|U|2746
6QUL|1|A|G|2747
6QUL|1|A|A|2748
6QUL|1|A|A|2749
6QUL|1|A|A|2750
6QUL|1|A|G|2751
6QUL|1|A|C|2752
6QUL|1|A|A|2753
6QUL|1|A|U|2754
6QUL|1|A|C|2755
6QUL|1|A|U|2756
6QUL|1|A|A|2757
6QUL|1|A|A|2758
6QUL|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36