HL_6QZP_025

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6QZP|1|L5|A|1630, 6QZP|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_025 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0946

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QZP|1|L5|G|1627
6QZP|1|L5|C|1628
6QZP|1|L5|G|1629
6QZP|1|L5|A|1630
6QZP|1|L5|A|1631
6QZP|1|L5|A|1632
6QZP|1|L5|G|1633
6QZP|1|L5|A|1634
6QZP|1|L5|C|1635

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37