HL_6QZP_075

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_075 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3576

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6QZP|1|L5|C|5021
6QZP|1|L5|U|5022
6QZP|1|L5|C|5023
6QZP|1|L5|C|5024
6QZP|1|L5|C|5025
6QZP|1|L5|U|5026
6QZP|1|L5|C|5027
6QZP|1|L5|G|5028

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LU

60S ribosomal protein L22

Chain SI

40S ribosomal protein S8