3D structure

PDB id
6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution cryo-EM structure of the human 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUA(A2M)UUC
Length
7 nucleotides
Bulged bases
6QZP|1|S2|A|158, 6QZP|1|S2|U|161
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QZP_084 not in the Motif Atlas
Homologous match to HL_4V88_188
Geometric discrepancy: 0.146
The information below is about HL_4V88_188
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6QZP|1|S2|G|156
6QZP|1|S2|U|157
6QZP|1|S2|A|158
6QZP|1|S2|A2M|159
6QZP|1|S2|U|160
6QZP|1|S2|U|161
6QZP|1|S2|C|162

Current chains

Chain S2
18S rRNA (1740-MER)

Nearby chains

Chain SG
40S ribosomal protein S6
Chain SY
40S ribosomal protein S24

Coloring options:


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