3D structure

PDB id
6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution cryo-EM structure of the human 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QZP_100 not in the Motif Atlas
Homologous match to HL_4V88_206
Geometric discrepancy: 0.1687
The information below is about HL_4V88_206
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

6QZP|1|S2|A|957
6QZP|1|S2|G|958
6QZP|1|S2|G|959
6QZP|1|S2|U|960
6QZP|1|S2|G|961
6QZP|1|S2|A|962
6QZP|1|S2|A|963
6QZP|1|S2|A|964
6QZP|1|S2|U|965
6QZP|1|S2|U|966

Current chains

Chain S2
18S rRNA (1740-MER)

Nearby chains

Chain S6
Transfer RNA; tRNA
Chain SF
40S ribosomal protein S5
Chain SO
40S ribosomal protein S14

Coloring options:


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