HL_6QZP_107

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

6QZP|1|S2|U|1300, 6QZP|1|S2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|S2|G|1294
6QZP|1|S2|A|1295
6QZP|1|S2|U|1296
6QZP|1|S2|U|1297
6QZP|1|S2|G|1298
6QZP|1|S2|A|1299
6QZP|1|S2|U|1300
6QZP|1|S2|A|1301
6QZP|1|S2|G|1302
6QZP|1|S2|C|1303
6QZP|1|S2|U|1304
6QZP|1|S2|C|1305

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a