HL_6QZP_109

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6QZP|1|S2|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_109 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1097

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6QZP|1|S2|G|1366
6QZP|1|S2|U|1367
6QZP|1|S2|U|1368
6QZP|1|S2|A|1369
6QZP|1|S2|A|1370
6QZP|1|S2|U|1371
6QZP|1|S2|U|1372
6QZP|1|S2|C|1373

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SR

40S ribosomal protein S17