HL_6QZP_128

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGCCG

Length

6 nucleotides

Bulged bases

6QZP|1|L5|G|4776, 6QZP|1|L5|C|4858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_128 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3958

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6QZP|1|L5|C|4774
6QZP|1|L5|C|4775
6QZP|1|L5|G|4776
6QZP|1|L5|C|4858
6QZP|1|L5|C|4859
6QZP|1|L5|G|4860

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a