HL_6R5Q_026

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_026 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1457

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R5Q|1|5|G|1561
6R5Q|1|5|G|1562
6R5Q|1|5|A|1563
6R5Q|1|5|A|1564
6R5Q|1|5|A|1565
6R5Q|1|5|C|1566

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain K

Small subunit ribosomal RNA; SSU rRNA

Chain QQ

ribosomal protein uS15

Chain p

ribosomal protein eL43