HL_6R5Q_060
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGACGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R5Q_060 not in the Motif Atlas
- Geometric match to HL_3TUP_001
- Geometric discrepancy: 0.3365
- The information below is about HL_3TUP_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
6R5Q|1|5|A|3945
6R5Q|1|5|G|3946
6R5Q|1|5|A|3947
6R5Q|1|5|C|3948
6R5Q|1|5|G|4065
6R5Q|1|5|U|4066
6R5Q|1|5|U|4067
6R5Q|1|5|U|4068
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain i
- 60S ribosomal protein L36
- Chain u
- 40S ribosomal protein S3a
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