HL_6R5Q_087

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6R5Q|1|K|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_087 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2481

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R5Q|1|K|G|156
6R5Q|1|K|U|157
6R5Q|1|K|A|158
6R5Q|1|K|A|159
6R5Q|1|K|U|160
6R5Q|1|K|U|161
6R5Q|1|K|C|162

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain NN

eS24

Chain z

40S ribosomal protein S6