HL_6R6G_021

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6R6G|1|5|C|886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_021 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.1552

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6R6G|1|5|U|878
6R6G|1|5|C|879
6R6G|1|5|U|880
6R6G|1|5|U|881
6R6G|1|5|G|882
6R6G|1|5|A|883
6R6G|1|5|A|884
6R6G|1|5|A|885
6R6G|1|5|C|886
6R6G|1|5|A|887

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32