3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UACGAAA
Length
7 nucleotides
Bulged bases
6R6G|1|5|A|929
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6R6G_022 not in the Motif Atlas
Geometric match to HL_8C3A_022
Geometric discrepancy: 0.2712
The information below is about HL_8C3A_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

6R6G|1|5|U|925
6R6G|1|5|A|926
6R6G|1|5|C|927
6R6G|1|5|G|928
6R6G|1|5|A|929
6R6G|1|5|A|930
6R6G|1|5|A|931

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
uL4
Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain Y
Ribosomal protein L26

Coloring options:


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