3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AUGAAGGU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6R6G_023 not in the Motif Atlas
Geometric match to HL_7A0S_056
Geometric discrepancy: 0.3221
The information below is about HL_7A0S_056
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6R6G|1|5|A|946
6R6G|1|5|U|947
6R6G|1|5|G|948
6R6G|1|5|A|949
6R6G|1|5|A|950
6R6G|1|5|G|951
6R6G|1|5|G|952
6R6G|1|5|U|953

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain Q
eL18
Chain a
uL15
Chain i
60S ribosomal protein L36

Coloring options:


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