HL_6R6G_029

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6R6G|1|5|C|1236, 6R6G|1|5|A|1239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_029 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1295

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6R6G|1|5|C|1235
6R6G|1|5|C|1236
6R6G|1|5|U|1237
6R6G|1|5|C|1238
6R6G|1|5|A|1239
6R6G|1|5|G|1240

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

uL15

Chain b

eL29

Chain o

eL42