HL_6R6G_033

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

6R6G|1|5|A|1428, 6R6G|1|5|A|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_033 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.1751

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6R6G|1|5|G|1423
6R6G|1|5|G|1424
6R6G|1|5|A|1425
6R6G|1|5|U|1426
6R6G|1|5|G|1427
6R6G|1|5|A|1428
6R6G|1|5|A|1429
6R6G|1|5|C|1430

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain e

eL32

Chain f

eL33