HL_6R6G_046

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_046 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5884

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6R6G|1|5|G|2057
6R6G|1|5|U|2058
6R6G|1|5|U|2059
6R6G|1|5|C|2060
6R6G|1|5|G|2061
6R6G|1|5|C|2062
6R6G|1|5|C|2063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain p

ribosomal protein eL43