HL_6R6G_050

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

6R6G|1|5|C|2207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_050 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1885

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R6G|1|5|U|2203
6R6G|1|5|G|2204
6R6G|1|5|A|2205
6R6G|1|5|A|2206
6R6G|1|5|C|2207
6R6G|1|5|A|2208
6R6G|1|5|G|2209

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19