HL_6R6G_057
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6R6G|1|5|A|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_057 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.1877
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6R6G|1|5|G|2455
6R6G|1|5|U|2456
6R6G|1|5|A|2457
6R6G|1|5|A|2458
6R6G|1|5|C|2459
6R6G|1|5|U|2460
6R6G|1|5|A|2461
6R6G|1|5|U|2462
6R6G|1|5|G|2463
6R6G|1|5|A|2464
6R6G|1|5|C|2465
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: