HL_6R6G_080

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCUAGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_080 not in the Motif Atlas

Geometric match to HL_7A0S_001

Geometric discrepancy: 0.1764

The information below is about HL_7A0S_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_93438.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6R6G|1|8|C|47
6R6G|1|8|A|48
6R6G|1|8|G|49
6R6G|1|8|C|50
6R6G|1|8|U|51
6R6G|1|8|A|52
6R6G|1|8|G|53
6R6G|1|8|C|54
6R6G|1|8|U|55
6R6G|1|8|G|56

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

uL23

Chain h

uL29

Chain j

Ribosomal protein L37

Chain l

eL39