HL_6R6G_084

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGGCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_084 not in the Motif Atlas

Geometric match to HL_1E8O_001

Geometric discrepancy: 0.1971

The information below is about HL_1E8O_001

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6R6G|1|AF|G|10
6R6G|1|AF|G|11
6R6G|1|AF|U|12
6R6G|1|AF|G|13
6R6G|1|AF|G|14
6R6G|1|AF|C|15
6R6G|1|AF|G|16
6R6G|1|AF|C|17

Current chains

Chain AF

7S RNA

Nearby chains

Chain AE

Signal recognition particle 14 kDa protein

Chain s

60S acidic ribosomal protein P0