HL_6R6G_095

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_095 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.2387

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6R6G|1|K|U|416
6R6G|1|K|C|417
6R6G|1|K|A|418
6R6G|1|K|G|419
6R6G|1|K|G|420
6R6G|1|K|G|421

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain EE

Ribosomal protein S11

Chain TT

Ribosomal protein S15a

Chain VV

Ribosomal protein S23

Chain v

uS5